Results 1 - 20 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 109859 | 0.66 | 0.676515 |
Target: 5'- gCGCAGGUgccgggcggUGCCaCCGGCGUc-GCCgCGGc -3' miRNA: 3'- -GCGUCCG---------ACGG-GGUCGCGacUGG-GCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 120573 | 0.67 | 0.600868 |
Target: 5'- aGCGGGCggGaCCuCCGGCGCcGGuCUCGGc -3' miRNA: 3'- gCGUCCGa-C-GG-GGUCGCGaCU-GGGCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 186237 | 0.67 | 0.629255 |
Target: 5'- aGCGauGCUGCCCCuGGC-CUGGCCCc- -3' miRNA: 3'- gCGUc-CGACGGGG-UCGcGACUGGGcc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 23620 | 0.67 | 0.638728 |
Target: 5'- gGCAGGCggGUggaCgGGCgGCUGGCCuCGGg -3' miRNA: 3'- gCGUCCGa-CGg--GgUCG-CGACUGG-GCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 198225 | 0.66 | 0.648198 |
Target: 5'- gGCAGGCc-CCCCGGC-CUGuaGCCCa- -3' miRNA: 3'- gCGUCCGacGGGGUCGcGAC--UGGGcc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 103442 | 0.66 | 0.657657 |
Target: 5'- gGC-GGCaGCUCCAGCG--GACCCGa -3' miRNA: 3'- gCGuCCGaCGGGGUCGCgaCUGGGCc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 168618 | 0.66 | 0.657657 |
Target: 5'- aGC-GGCUGCU--GGCGCUGguGCCgCGGg -3' miRNA: 3'- gCGuCCGACGGggUCGCGAC--UGG-GCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 92083 | 0.66 | 0.657657 |
Target: 5'- cCGCGcGUUGCgCCAGCaGCUccgaGCCCGGc -3' miRNA: 3'- -GCGUcCGACGgGGUCG-CGAc---UGGGCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 42315 | 0.66 | 0.667098 |
Target: 5'- cCGCAGGCgcaGCCaCA-CGCUGGCCUu- -3' miRNA: 3'- -GCGUCCGa--CGGgGUcGCGACUGGGcc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 37201 | 0.67 | 0.600868 |
Target: 5'- aGC-GGCUGCCUCaAGCGCaGcGCCCa- -3' miRNA: 3'- gCGuCCGACGGGG-UCGCGaC-UGGGcc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 185250 | 0.67 | 0.591438 |
Target: 5'- uGC-GGCccagGCCUCGGaCGaccCUGGCCCGGg -3' miRNA: 3'- gCGuCCGa---CGGGGUC-GC---GACUGGGCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 68337 | 0.67 | 0.591438 |
Target: 5'- uGCGGgaGCUGCUgCAGCaGCUG-CCCGu -3' miRNA: 3'- gCGUC--CGACGGgGUCG-CGACuGGGCc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 31635 | 0.71 | 0.375104 |
Target: 5'- uCGUAGGUgaagaccugGCCCaCGGCGUUGACgCCGa -3' miRNA: 3'- -GCGUCCGa--------CGGG-GUCGCGACUG-GGCc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 126013 | 0.7 | 0.422321 |
Target: 5'- uCGCAGG-UGCUCCAGCGCcacGAgCCGc -3' miRNA: 3'- -GCGUCCgACGGGGUCGCGa--CUgGGCc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 70676 | 0.7 | 0.455714 |
Target: 5'- cCGCaucAGGCUGCCCgAGgGCcugGACgUGGa -3' miRNA: 3'- -GCG---UCCGACGGGgUCgCGa--CUGgGCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 33733 | 0.69 | 0.526428 |
Target: 5'- aCGguGGCUcGgCCCAGCGCcuugcagGAgUCGGa -3' miRNA: 3'- -GCguCCGA-CgGGGUCGCGa------CUgGGCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 168579 | 0.69 | 0.526428 |
Target: 5'- aGCGGGCgucucgGCCCgAGUGCUaGCUgCGGa -3' miRNA: 3'- gCGUCCGa-----CGGGgUCGCGAcUGG-GCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 65199 | 0.69 | 0.526428 |
Target: 5'- aCGCGGGCguucuaccGCCUCGG-GUUGACCCc- -3' miRNA: 3'- -GCGUCCGa-------CGGGGUCgCGACUGGGcc -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 77405 | 0.68 | 0.554024 |
Target: 5'- aCGCuGGC-GCacaUGGCGgUGACCCGGg -3' miRNA: 3'- -GCGuCCGaCGgg-GUCGCgACUGGGCC- -5' |
|||||||
16041 | 5' | -63.6 | NC_004065.1 | + | 67887 | 0.67 | 0.591438 |
Target: 5'- -uCAGGUUGCCCgAGCGuCUG-UCCGa -3' miRNA: 3'- gcGUCCGACGGGgUCGC-GACuGGGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home