miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16044 3' -53.6 NC_004065.1 + 32670 0.66 0.989217
Target:  5'- --cCUCGCGGGcGC-GGuucUCGCGCa -3'
miRNA:   3'- gaaGAGCGUCCaCGaCCuu-AGCGUGc -5'
16044 3' -53.6 NC_004065.1 + 142643 0.66 0.989217
Target:  5'- -aUCgCGCAGGUGCUcagGGAGuUCGUggccgagggGCGa -3'
miRNA:   3'- gaAGaGCGUCCACGA---CCUU-AGCG---------UGC- -5'
16044 3' -53.6 NC_004065.1 + 207776 0.66 0.989217
Target:  5'- uUUCUCGuCGGGaccaUGUUGGGcgCcgGCACGa -3'
miRNA:   3'- gAAGAGC-GUCC----ACGACCUuaG--CGUGC- -5'
16044 3' -53.6 NC_004065.1 + 187154 0.66 0.987803
Target:  5'- -cUUUCGaCAGGUGCgUGGcgucccUCGCGCu -3'
miRNA:   3'- gaAGAGC-GUCCACG-ACCuu----AGCGUGc -5'
16044 3' -53.6 NC_004065.1 + 170679 0.66 0.98625
Target:  5'- ----aCGCAcucGGaGCUGGAAaUCGCACGc -3'
miRNA:   3'- gaagaGCGU---CCaCGACCUU-AGCGUGC- -5'
16044 3' -53.6 NC_004065.1 + 148958 0.66 0.986087
Target:  5'- ----gCGCcccuaaccauuaAGGUGCUGGAcauugcgAUCGCGCa -3'
miRNA:   3'- gaagaGCG------------UCCACGACCU-------UAGCGUGc -5'
16044 3' -53.6 NC_004065.1 + 126010 0.66 0.982694
Target:  5'- -cUUUCGCAGGUGCUccag-CGcCACGa -3'
miRNA:   3'- gaAGAGCGUCCACGAccuuaGC-GUGC- -5'
16044 3' -53.6 NC_004065.1 + 24823 0.67 0.978485
Target:  5'- --cCUUuCGGGUGgUGGAGaCGCACGc -3'
miRNA:   3'- gaaGAGcGUCCACgACCUUaGCGUGC- -5'
16044 3' -53.6 NC_004065.1 + 216451 0.67 0.978485
Target:  5'- uUUCUCGCGGGcgaacGCUGGAuagguuUCGUcCa -3'
miRNA:   3'- gAAGAGCGUCCa----CGACCUu-----AGCGuGc -5'
16044 3' -53.6 NC_004065.1 + 115628 0.67 0.978485
Target:  5'- uCUUCagGCGGGguagGCUGGAcg-GCAUGg -3'
miRNA:   3'- -GAAGagCGUCCa---CGACCUuagCGUGC- -5'
16044 3' -53.6 NC_004065.1 + 67089 0.67 0.978485
Target:  5'- ---aUCGauccGGUGCUGGAcacgacGUCGCugGa -3'
miRNA:   3'- gaagAGCgu--CCACGACCU------UAGCGugC- -5'
16044 3' -53.6 NC_004065.1 + 106270 0.68 0.964724
Target:  5'- --aCUCGaccaGGGUGCUGGcgcagaacUCGCACc -3'
miRNA:   3'- gaaGAGCg---UCCACGACCuu------AGCGUGc -5'
16044 3' -53.6 NC_004065.1 + 105527 0.68 0.961364
Target:  5'- ----gCGCAGaUGCUGGAGaucCGCGCGg -3'
miRNA:   3'- gaagaGCGUCcACGACCUUa--GCGUGC- -5'
16044 3' -53.6 NC_004065.1 + 31743 0.68 0.957789
Target:  5'- -----aGCGGGUGCauccgccagaaaUGGAgAUCGCACGa -3'
miRNA:   3'- gaagagCGUCCACG------------ACCU-UAGCGUGC- -5'
16044 3' -53.6 NC_004065.1 + 179655 0.68 0.956674
Target:  5'- aUUCUCucgucaggaugacaGCGGGgggGCUcGGGAUCGCGgCGg -3'
miRNA:   3'- gAAGAG--------------CGUCCa--CGA-CCUUAGCGU-GC- -5'
16044 3' -53.6 NC_004065.1 + 56834 0.68 0.953994
Target:  5'- -aUCUCGUccacgAGGUGCcgaaAAUCGCACGa -3'
miRNA:   3'- gaAGAGCG-----UCCACGacc-UUAGCGUGC- -5'
16044 3' -53.6 NC_004065.1 + 109856 0.68 0.953603
Target:  5'- -aUCgCGCAGGUGCcGGGcggugccaccggcGUCGcCGCGg -3'
miRNA:   3'- gaAGaGCGUCCACGaCCU-------------UAGC-GUGC- -5'
16044 3' -53.6 NC_004065.1 + 146560 0.68 0.949976
Target:  5'- uUUCaUGCAGGgGCUaGGggUCGCGgGu -3'
miRNA:   3'- gAAGaGCGUCCaCGA-CCuuAGCGUgC- -5'
16044 3' -53.6 NC_004065.1 + 30893 0.69 0.936545
Target:  5'- ----cCGCAGG-GCgucGGggUCGCACu -3'
miRNA:   3'- gaagaGCGUCCaCGa--CCuuAGCGUGc -5'
16044 3' -53.6 NC_004065.1 + 85487 0.69 0.931603
Target:  5'- --cUUCGCGaccauGGUGCUGGccauGUCGCugGc -3'
miRNA:   3'- gaaGAGCGU-----CCACGACCu---UAGCGugC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.