miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16044 5' -57.1 NC_004065.1 + 4009 0.66 0.948186
Target:  5'- cCUCG-GGACCUCAGac-C-CUGUCGAu -3'
miRNA:   3'- -GAGCaCCUGGGGUCgaaGuGGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 165606 0.66 0.948186
Target:  5'- -gCGUGG-CCgcgaCCAGCUUCucgACCGUCu- -3'
miRNA:   3'- gaGCACCuGG----GGUCGAAG---UGGCAGcu -5'
16044 5' -57.1 NC_004065.1 + 159059 0.66 0.943985
Target:  5'- cCUCGUGuGCUCCGGC---GCCGUCu- -3'
miRNA:   3'- -GAGCACcUGGGGUCGaagUGGCAGcu -5'
16044 5' -57.1 NC_004065.1 + 194425 0.66 0.939568
Target:  5'- -cCGUGGAUCCC-GCaccgaCACCGcCGAc -3'
miRNA:   3'- gaGCACCUGGGGuCGaa---GUGGCaGCU- -5'
16044 5' -57.1 NC_004065.1 + 82575 0.66 0.934932
Target:  5'- -aCGUGGAUCCCgcagaacucguuGGCguccaugaCGCCGUCGu -3'
miRNA:   3'- gaGCACCUGGGG------------UCGaa------GUGGCAGCu -5'
16044 5' -57.1 NC_004065.1 + 181689 0.66 0.934932
Target:  5'- cCUCGgucuuccGACCCCGGCUcauccUCAUCaUCGAu -3'
miRNA:   3'- -GAGCac-----CUGGGGUCGA-----AGUGGcAGCU- -5'
16044 5' -57.1 NC_004065.1 + 210237 0.66 0.930077
Target:  5'- cCUCGUGGACgacucuuuugacUCCGGCU---CCGUCGc -3'
miRNA:   3'- -GAGCACCUG------------GGGUCGAaguGGCAGCu -5'
16044 5' -57.1 NC_004065.1 + 184930 0.66 0.925002
Target:  5'- gCUgGaGGACCCCgAGCUgCA-CGUCGAa -3'
miRNA:   3'- -GAgCaCCUGGGG-UCGAaGUgGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 56639 0.66 0.925002
Target:  5'- --gGUGGcagcgGCCgCGGCacccUUCACCGUCGGu -3'
miRNA:   3'- gagCACC-----UGGgGUCG----AAGUGGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 34192 0.67 0.914193
Target:  5'- aCUCGgacGGGCUCgAGCgccgucUCACCGUCc- -3'
miRNA:   3'- -GAGCa--CCUGGGgUCGa-----AGUGGCAGcu -5'
16044 5' -57.1 NC_004065.1 + 41759 0.67 0.913629
Target:  5'- uUCGUGGugCUgacgacgCAGCU--GCUGUCGAa -3'
miRNA:   3'- gAGCACCugGG-------GUCGAagUGGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 34640 0.67 0.910779
Target:  5'- -cCGUGGAagaCCUCGGCcgUCacgguguccaggaagGCCGUCGAg -3'
miRNA:   3'- gaGCACCU---GGGGUCGa-AG---------------UGGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 147820 0.67 0.90846
Target:  5'- --aGUGGACCCCuuggcgcGCUUC-CUGaUCGAc -3'
miRNA:   3'- gagCACCUGGGGu------CGAAGuGGC-AGCU- -5'
16044 5' -57.1 NC_004065.1 + 139585 0.67 0.90846
Target:  5'- aCUCGggagGuGGCCgCGGCgaUCGCCGUUGGc -3'
miRNA:   3'- -GAGCa---C-CUGGgGUCGa-AGUGGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 109610 0.67 0.90846
Target:  5'- gCUCGacccccGGGCCgCGGUgcccacCACCGUCGAg -3'
miRNA:   3'- -GAGCa-----CCUGGgGUCGaa----GUGGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 111349 0.67 0.90251
Target:  5'- gUCGccUGGAUCuCCGcCUUCAUCGUCGGc -3'
miRNA:   3'- gAGC--ACCUGG-GGUcGAAGUGGCAGCU- -5'
16044 5' -57.1 NC_004065.1 + 161124 0.67 0.90251
Target:  5'- gCUCGgcgucACCuCCAGCUUCACC-UCGGc -3'
miRNA:   3'- -GAGCacc--UGG-GGUCGAAGUGGcAGCU- -5'
16044 5' -57.1 NC_004065.1 + 66740 0.67 0.90251
Target:  5'- -cCGUcGGACCCCGGCggCGUCG-CGAc -3'
miRNA:   3'- gaGCA-CCUGGGGUCGaaGUGGCaGCU- -5'
16044 5' -57.1 NC_004065.1 + 150266 0.68 0.876594
Target:  5'- aUCGUGGGCUCCGcguagaugaaacGCUUCAgCCGcCGc -3'
miRNA:   3'- gAGCACCUGGGGU------------CGAAGU-GGCaGCu -5'
16044 5' -57.1 NC_004065.1 + 77700 0.68 0.876594
Target:  5'- -gCGUGGGCCCCGuGUUccugUCGCCGauccCGAc -3'
miRNA:   3'- gaGCACCUGGGGU-CGA----AGUGGCa---GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.