miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16045 3' -58.3 NC_004065.1 + 34327 0.66 0.9234
Target:  5'- cGGAGAauacGGCggCGugGACGa--GAGGAg -3'
miRNA:   3'- uCCUCU----CCGa-GCugCUGCcagCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 100588 0.66 0.9234
Target:  5'- cGGAGAccuuaGGUaUGAUGGCGGUCGcGGc -3'
miRNA:   3'- uCCUCU-----CCGaGCUGCUGCCAGCuCCu -5'
16045 3' -58.3 NC_004065.1 + 221616 0.66 0.9234
Target:  5'- cGGAGAcGUUCGGCGuACaaaUCGAGGAu -3'
miRNA:   3'- uCCUCUcCGAGCUGC-UGcc-AGCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 84756 0.66 0.918099
Target:  5'- cGGcGAGGCUCG--GACGGUCucucuaAGGAu -3'
miRNA:   3'- uCCuCUCCGAGCugCUGCCAGc-----UCCU- -5'
16045 3' -58.3 NC_004065.1 + 54503 0.66 0.918099
Target:  5'- gAGGAcGAGGUggUGGaGGCGGUugaCGAGGAu -3'
miRNA:   3'- -UCCU-CUCCGa-GCUgCUGCCA---GCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 152663 0.66 0.918099
Target:  5'- cGGAGccaacGGC--GGCGACGGcgCGAGGGa -3'
miRNA:   3'- uCCUCu----CCGagCUGCUGCCa-GCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 80150 0.66 0.918099
Target:  5'- cGGcAGAGGCggcUGACGACGGgccCGAacucacaugGGAu -3'
miRNA:   3'- uCC-UCUCCGa--GCUGCUGCCa--GCU---------CCU- -5'
16045 3' -58.3 NC_004065.1 + 187234 0.66 0.917557
Target:  5'- aAGGAGAagaggaugacgaaGGgaCGACGACGa--GAGGAg -3'
miRNA:   3'- -UCCUCU-------------CCgaGCUGCUGCcagCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 116257 0.66 0.910885
Target:  5'- cGGGGGucagcAGG-UCGACGAgcucuugugucaguCGGUUGGGGAa -3'
miRNA:   3'- -UCCUC-----UCCgAGCUGCU--------------GCCAGCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 189647 0.66 0.906853
Target:  5'- gAGGAcccgGAGGaCaUGACGACGaGUCG-GGAg -3'
miRNA:   3'- -UCCU----CUCC-GaGCUGCUGC-CAGCuCCU- -5'
16045 3' -58.3 NC_004065.1 + 109135 0.66 0.906853
Target:  5'- cGGGGAcGGCgggUGACGGCGGUucCGucGAc -3'
miRNA:   3'- uCCUCU-CCGa--GCUGCUGCCA--GCucCU- -5'
16045 3' -58.3 NC_004065.1 + 111370 0.66 0.906853
Target:  5'- cAGGAcGAGGCgUCGucgucCGACGc-CGAGGAg -3'
miRNA:   3'- -UCCU-CUCCG-AGCu----GCUGCcaGCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 83571 0.66 0.900911
Target:  5'- cGGAGuAGa--CGGCGACGG-CGGGGAa -3'
miRNA:   3'- uCCUC-UCcgaGCUGCUGCCaGCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 38426 0.67 0.888404
Target:  5'- cGGGAGAgGGCgucuaCGACGACGGUUu---- -3'
miRNA:   3'- -UCCUCU-CCGa----GCUGCUGCCAGcuccu -5'
16045 3' -58.3 NC_004065.1 + 152321 0.67 0.888404
Target:  5'- cGGcGGGGa-CGAUGACGGcuucgaccUCGAGGAg -3'
miRNA:   3'- uCCuCUCCgaGCUGCUGCC--------AGCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 31286 0.67 0.888404
Target:  5'- cGGAGAGGaggacgUCGGCGGCGucGUCGuucacauguGGGAc -3'
miRNA:   3'- uCCUCUCCg-----AGCUGCUGC--CAGC---------UCCU- -5'
16045 3' -58.3 NC_004065.1 + 96522 0.67 0.881844
Target:  5'- --cGGAGGa-CGACGACGaGUCcGAGGAg -3'
miRNA:   3'- uccUCUCCgaGCUGCUGC-CAG-CUCCU- -5'
16045 3' -58.3 NC_004065.1 + 36118 0.67 0.881844
Target:  5'- cGGGGccGCUgcCGGCGGCGGUUGuGGu -3'
miRNA:   3'- uCCUCucCGA--GCUGCUGCCAGCuCCu -5'
16045 3' -58.3 NC_004065.1 + 167184 0.67 0.881844
Target:  5'- cGGGGGAGcCuUCGGgGugGGUgGGGGGc -3'
miRNA:   3'- -UCCUCUCcG-AGCUgCugCCAgCUCCU- -5'
16045 3' -58.3 NC_004065.1 + 171960 0.67 0.875084
Target:  5'- cGGGcGGuGGCggCGGCGGCGG-CgGAGGGg -3'
miRNA:   3'- -UCC-UCuCCGa-GCUGCUGCCaG-CUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.