miRNA display CGI


Results 1 - 20 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16045 5' -62.6 NC_004065.1 + 115036 0.65 0.761944
Target:  5'- -aUCCGCGCgGcCGcCAgggccgagggcaacGGCGCGCgCGa -3'
miRNA:   3'- agAGGCGCGgC-GCaGU--------------UCGCGCGgGC- -5'
16045 5' -62.6 NC_004065.1 + 76388 0.66 0.755753
Target:  5'- --gCCGCggaugagcucGCCGcCGUCcgaguGGCGCcGCCCGa -3'
miRNA:   3'- agaGGCG----------CGGC-GCAGu----UCGCG-CGGGC- -5'
16045 5' -62.6 NC_004065.1 + 60654 0.66 0.755753
Target:  5'- --cCCGCGCCacgcacGCGUCGAGCuGacagacgGCCCa -3'
miRNA:   3'- agaGGCGCGG------CGCAGUUCG-Cg------CGGGc -5'
16045 5' -62.6 NC_004065.1 + 432 0.66 0.750409
Target:  5'- -gUCaCGCGCaCGUGUUAGcauaggaauccagacGCGCGCUCGc -3'
miRNA:   3'- agAG-GCGCG-GCGCAGUU---------------CGCGCGGGC- -5'
16045 5' -62.6 NC_004065.1 + 206799 0.66 0.746828
Target:  5'- --cUCGUGUCGCGUCcagaguccGUGCGCCUGc -3'
miRNA:   3'- agaGGCGCGGCGCAGuu------CGCGCGGGC- -5'
16045 5' -62.6 NC_004065.1 + 92528 0.66 0.746828
Target:  5'- --cUCGCGCgCGCGUacgggcgggCGGGCGCGCgCa -3'
miRNA:   3'- agaGGCGCG-GCGCA---------GUUCGCGCGgGc -5'
16045 5' -62.6 NC_004065.1 + 187300 0.66 0.746828
Target:  5'- --gCCGCGCUGCGaUCAcuggGGCggaggaGCGCUCGc -3'
miRNA:   3'- agaGGCGCGGCGC-AGU----UCG------CGCGGGC- -5'
16045 5' -62.6 NC_004065.1 + 131826 0.66 0.746828
Target:  5'- -gUCCGgGCUgugguagaacaGCGUCucGGCGUGCgCCGa -3'
miRNA:   3'- agAGGCgCGG-----------CGCAGu-UCGCGCG-GGC- -5'
16045 5' -62.6 NC_004065.1 + 162646 0.66 0.745033
Target:  5'- cCUCgGCGCCcagccuaggcGUGUCuagacucgaccGCGCGUCCGg -3'
miRNA:   3'- aGAGgCGCGG----------CGCAGuu---------CGCGCGGGC- -5'
16045 5' -62.6 NC_004065.1 + 170236 0.66 0.737817
Target:  5'- gUCUCgGCgagaaccgGCC-CGUCGAGC-UGCCCGu -3'
miRNA:   3'- -AGAGgCG--------CGGcGCAGUUCGcGCGGGC- -5'
16045 5' -62.6 NC_004065.1 + 150413 0.66 0.737817
Target:  5'- -gUCCGCG-CGCG-C-AGCGgGUCCGg -3'
miRNA:   3'- agAGGCGCgGCGCaGuUCGCgCGGGC- -5'
16045 5' -62.6 NC_004065.1 + 110135 0.66 0.737817
Target:  5'- uUCUCCG-GCCGCGccggCAAGUucuCGCUCa -3'
miRNA:   3'- -AGAGGCgCGGCGCa---GUUCGc--GCGGGc -5'
16045 5' -62.6 NC_004065.1 + 131750 0.66 0.737817
Target:  5'- -aUCCGgauCCGCGagGcGCGCGCCCa -3'
miRNA:   3'- agAGGCgc-GGCGCagUuCGCGCGGGc -5'
16045 5' -62.6 NC_004065.1 + 1122 0.66 0.737817
Target:  5'- cCUCC-C-CCGCG-CGGGUGCGCuuGa -3'
miRNA:   3'- aGAGGcGcGGCGCaGUUCGCGCGggC- -5'
16045 5' -62.6 NC_004065.1 + 11456 0.66 0.737817
Target:  5'- cCUCCGCGCC-CGUUuucuAGUGU-CCCa -3'
miRNA:   3'- aGAGGCGCGGcGCAGu---UCGCGcGGGc -5'
16045 5' -62.6 NC_004065.1 + 161493 0.66 0.728727
Target:  5'- cCUCCGcCGCCGCcUCcucggccuccggGAGaUGCGUCCGc -3'
miRNA:   3'- aGAGGC-GCGGCGcAG------------UUC-GCGCGGGC- -5'
16045 5' -62.6 NC_004065.1 + 61851 0.66 0.728727
Target:  5'- --gUCGCGCCGCuGUC--GCGC-CCCGc -3'
miRNA:   3'- agaGGCGCGGCG-CAGuuCGCGcGGGC- -5'
16045 5' -62.6 NC_004065.1 + 42031 0.66 0.728727
Target:  5'- cCUCCGCgaGCCaUGUUgcGCGCGgCCGc -3'
miRNA:   3'- aGAGGCG--CGGcGCAGuuCGCGCgGGC- -5'
16045 5' -62.6 NC_004065.1 + 62682 0.66 0.728727
Target:  5'- uUCUCCuaGCGCCGCGUUccGCaCGCa-- -3'
miRNA:   3'- -AGAGG--CGCGGCGCAGuuCGcGCGggc -5'
16045 5' -62.6 NC_004065.1 + 217156 0.66 0.728727
Target:  5'- gUCUCCGCGCuCGUucUCGuGUGUGCUCu -3'
miRNA:   3'- -AGAGGCGCG-GCGc-AGUuCGCGCGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.