Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16046 | 3' | -54.9 | NC_004065.1 | + | 128725 | 0.66 | 0.980848 |
Target: 5'- aGGGAGAGG-CGGCUgGCCCCGaggcaGCCGu -3' miRNA: 3'- cUUUUCUCCaGCUGG-UGGGGC-----UGGCu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 211479 | 0.66 | 0.980848 |
Target: 5'- -cGGAGAGGUCGuCgGCgUCGAguCCGAa -3' miRNA: 3'- cuUUUCUCCAGCuGgUGgGGCU--GGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 67701 | 0.66 | 0.980848 |
Target: 5'- -uGAGGGGGUCGAgCACCgUCGguaucGCCGu -3' miRNA: 3'- cuUUUCUCCAGCUgGUGG-GGC-----UGGCu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 135383 | 0.66 | 0.980642 |
Target: 5'- -cAGGGAcGGUgacgcgcCGGCCGCgCCCGACCc- -3' miRNA: 3'- cuUUUCU-CCA-------GCUGGUG-GGGCUGGcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 51573 | 0.66 | 0.980225 |
Target: 5'- cGAuuGGAGGcgaaccgccacucuUCGGCgACCCCGAagaUGAu -3' miRNA: 3'- -CUuuUCUCC--------------AGCUGgUGGGGCUg--GCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 113922 | 0.66 | 0.978714 |
Target: 5'- ------cGG-CGACCACCCCucGCCGGa -3' miRNA: 3'- cuuuucuCCaGCUGGUGGGGc-UGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 150445 | 0.66 | 0.978714 |
Target: 5'- -----cAGGugacacUCGGCCACCUCGGCCa- -3' miRNA: 3'- cuuuucUCC------AGCUGGUGGGGCUGGcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 114121 | 0.66 | 0.978714 |
Target: 5'- ----cGAGGccgaCGACgGCCCCGAgCCGc -3' miRNA: 3'- cuuuuCUCCa---GCUGgUGGGGCU-GGCu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 68255 | 0.66 | 0.978714 |
Target: 5'- aGAAAGuccgugaccGGGUCGGCCgaaggaACCCC-ACCGGc -3' miRNA: 3'- cUUUUC---------UCCAGCUGG------UGGGGcUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 120459 | 0.66 | 0.978714 |
Target: 5'- aGGAGAcAGG-CGGCCACCUCGaggucGCUGAc -3' miRNA: 3'- -CUUUUcUCCaGCUGGUGGGGC-----UGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 116581 | 0.66 | 0.978714 |
Target: 5'- --uGAGGGGcacggCgGGCC-CCCCGGCCGc -3' miRNA: 3'- cuuUUCUCCa----G-CUGGuGGGGCUGGCu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 54321 | 0.66 | 0.978491 |
Target: 5'- ----cGuGGUCGACCuucuCCCCGuggucucaggugaACCGGa -3' miRNA: 3'- cuuuuCuCCAGCUGGu---GGGGC-------------UGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 109461 | 0.66 | 0.977352 |
Target: 5'- ---cGGAGGUcccgcccgcucgcgcCGACCGCCgCCGgcacACCGGa -3' miRNA: 3'- cuuuUCUCCA---------------GCUGGUGG-GGC----UGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 17522 | 0.66 | 0.976409 |
Target: 5'- ---cGGAGGUCGugCGgCCCGAa--- -3' miRNA: 3'- cuuuUCUCCAGCugGUgGGGCUggcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 59680 | 0.66 | 0.976409 |
Target: 5'- ------cGGUCGA-CAUCCCGACCa- -3' miRNA: 3'- cuuuucuCCAGCUgGUGGGGCUGGcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 84245 | 0.66 | 0.976409 |
Target: 5'- ----uGAGGaucugugCGAgCGCCCgCGACCGGc -3' miRNA: 3'- cuuuuCUCCa------GCUgGUGGG-GCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 202149 | 0.66 | 0.976409 |
Target: 5'- cGGAcGGAGGUCccggccguCCAUCUCGACCa- -3' miRNA: 3'- -CUUuUCUCCAGcu------GGUGGGGCUGGcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 198847 | 0.66 | 0.976409 |
Target: 5'- cGAAAGGGGaccaGACCaugcuaGCUCCGGCCGc -3' miRNA: 3'- cUUUUCUCCag--CUGG------UGGGGCUGGCu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 8308 | 0.66 | 0.976409 |
Target: 5'- ---uAGcGGUCGugUACCUcagaCGGCCGAa -3' miRNA: 3'- cuuuUCuCCAGCugGUGGG----GCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 119289 | 0.66 | 0.975684 |
Target: 5'- cAGAAGGGGaCGuCCGCCaauccauaaaauacUCGGCCGAg -3' miRNA: 3'- cUUUUCUCCaGCuGGUGG--------------GGCUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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