miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 183285 0.66 0.97126
Target:  5'- gGAGGAGAGcagcgCGugCGCCUCGugCGc -3'
miRNA:   3'- -CUUUUCUCca---GCugGUGGGGCugGCu -5'
16046 3' -54.9 NC_004065.1 + 84245 0.66 0.976409
Target:  5'- ----uGAGGaucugugCGAgCGCCCgCGACCGGc -3'
miRNA:   3'- cuuuuCUCCa------GCUgGUGGG-GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 211479 0.66 0.980848
Target:  5'- -cGGAGAGGUCGuCgGCgUCGAguCCGAa -3'
miRNA:   3'- cuUUUCUCCAGCuGgUGgGGCU--GGCU- -5'
16046 3' -54.9 NC_004065.1 + 107552 0.66 0.970423
Target:  5'- -----cGGGUCGugcgcuaccgggacGCCACCCUGACCc- -3'
miRNA:   3'- cuuuucUCCAGC--------------UGGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 51573 0.66 0.980225
Target:  5'- cGAuuGGAGGcgaaccgccacucuUCGGCgACCCCGAagaUGAu -3'
miRNA:   3'- -CUuuUCUCC--------------AGCUGgUGGGGCUg--GCU- -5'
16046 3' -54.9 NC_004065.1 + 135383 0.66 0.980642
Target:  5'- -cAGGGAcGGUgacgcgcCGGCCGCgCCCGACCc- -3'
miRNA:   3'- cuUUUCU-CCA-------GCUGGUG-GGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 81606 0.66 0.973927
Target:  5'- -----cAGG-CGACCAUgCUGGCCGAg -3'
miRNA:   3'- cuuuucUCCaGCUGGUGgGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 185148 0.66 0.973927
Target:  5'- cGAAcGGAGG-CGuCCugCUCGAgCGAg -3'
miRNA:   3'- -CUUuUCUCCaGCuGGugGGGCUgGCU- -5'
16046 3' -54.9 NC_004065.1 + 119289 0.66 0.975684
Target:  5'- cAGAAGGGGaCGuCCGCCaauccauaaaauacUCGGCCGAg -3'
miRNA:   3'- cUUUUCUCCaGCuGGUGG--------------GGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 17522 0.66 0.976409
Target:  5'- ---cGGAGGUCGugCGgCCCGAa--- -3'
miRNA:   3'- cuuuUCUCCAGCugGUgGGGCUggcu -5'
16046 3' -54.9 NC_004065.1 + 128725 0.66 0.980848
Target:  5'- aGGGAGAGG-CGGCUgGCCCCGaggcaGCCGu -3'
miRNA:   3'- cUUUUCUCCaGCUGG-UGGGGC-----UGGCu -5'
16046 3' -54.9 NC_004065.1 + 114121 0.66 0.978714
Target:  5'- ----cGAGGccgaCGACgGCCCCGAgCCGc -3'
miRNA:   3'- cuuuuCUCCa---GCUGgUGGGGCU-GGCu -5'
16046 3' -54.9 NC_004065.1 + 19074 0.66 0.970423
Target:  5'- -cGAGGAGGa-GACCGCgCCCagguucgggucacuGACCGAg -3'
miRNA:   3'- cuUUUCUCCagCUGGUG-GGG--------------CUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 176795 0.66 0.973927
Target:  5'- uGAGgcGAGGcgCGugCGCCa-GACCGAu -3'
miRNA:   3'- -CUUuuCUCCa-GCugGUGGggCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 53433 0.66 0.97126
Target:  5'- -------cGUCGuucUCGCCCCGACCGAc -3'
miRNA:   3'- cuuuucucCAGCu--GGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 61046 0.66 0.973927
Target:  5'- ----cGAGGUCcGCCGCgCUGACgGAc -3'
miRNA:   3'- cuuuuCUCCAGcUGGUGgGGCUGgCU- -5'
16046 3' -54.9 NC_004065.1 + 74141 0.66 0.973927
Target:  5'- ----cGAGG-CGGgUGCCCgGGCCGAg -3'
miRNA:   3'- cuuuuCUCCaGCUgGUGGGgCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 150445 0.66 0.978714
Target:  5'- -----cAGGugacacUCGGCCACCUCGGCCa- -3'
miRNA:   3'- cuuuucUCC------AGCUGGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 120612 0.66 0.975684
Target:  5'- ----cGAGGaUCGAguagcucguggcguCCGCCgCGGCCGAc -3'
miRNA:   3'- cuuuuCUCC-AGCU--------------GGUGGgGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 202149 0.66 0.976409
Target:  5'- cGGAcGGAGGUCccggccguCCAUCUCGACCa- -3'
miRNA:   3'- -CUUuUCUCCAGcu------GGUGGGGCUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.