miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 107552 0.66 0.970423
Target:  5'- -----cGGGUCGugcgcuaccgggacGCCACCCUGACCc- -3'
miRNA:   3'- cuuuucUCCAGC--------------UGGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 198847 0.66 0.976409
Target:  5'- cGAAAGGGGaccaGACCaugcuaGCUCCGGCCGc -3'
miRNA:   3'- cUUUUCUCCag--CUGG------UGGGGCUGGCu -5'
16046 3' -54.9 NC_004065.1 + 17522 0.66 0.976409
Target:  5'- ---cGGAGGUCGugCGgCCCGAa--- -3'
miRNA:   3'- cuuuUCUCCAGCugGUgGGGCUggcu -5'
16046 3' -54.9 NC_004065.1 + 54321 0.66 0.978491
Target:  5'- ----cGuGGUCGACCuucuCCCCGuggucucaggugaACCGGa -3'
miRNA:   3'- cuuuuCuCCAGCUGGu---GGGGC-------------UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 116581 0.66 0.978714
Target:  5'- --uGAGGGGcacggCgGGCC-CCCCGGCCGc -3'
miRNA:   3'- cuuUUCUCCa----G-CUGGuGGGGCUGGCu -5'
16046 3' -54.9 NC_004065.1 + 113922 0.66 0.978714
Target:  5'- ------cGG-CGACCACCCCucGCCGGa -3'
miRNA:   3'- cuuuucuCCaGCUGGUGGGGc-UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 185148 0.66 0.973927
Target:  5'- cGAAcGGAGG-CGuCCugCUCGAgCGAg -3'
miRNA:   3'- -CUUuUCUCCaGCuGGugGGGCUgGCU- -5'
16046 3' -54.9 NC_004065.1 + 84245 0.66 0.976409
Target:  5'- ----uGAGGaucugugCGAgCGCCCgCGACCGGc -3'
miRNA:   3'- cuuuuCUCCa------GCUgGUGGG-GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 59680 0.66 0.976409
Target:  5'- ------cGGUCGA-CAUCCCGACCa- -3'
miRNA:   3'- cuuuucuCCAGCUgGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 68255 0.66 0.978714
Target:  5'- aGAAAGuccgugaccGGGUCGGCCgaaggaACCCC-ACCGGc -3'
miRNA:   3'- cUUUUC---------UCCAGCUGG------UGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 148183 0.67 0.962093
Target:  5'- -----cGGGcCGugCGCCCCGAuccCCGAc -3'
miRNA:   3'- cuuuucUCCaGCugGUGGGGCU---GGCU- -5'
16046 3' -54.9 NC_004065.1 + 52936 0.67 0.95107
Target:  5'- ----cGAGGgu-GCCACCCCGugCGc -3'
miRNA:   3'- cuuuuCUCCagcUGGUGGGGCugGCu -5'
16046 3' -54.9 NC_004065.1 + 47397 0.67 0.958631
Target:  5'- aGGAAAGAG--CGACCuuCCCCGGCUa- -3'
miRNA:   3'- -CUUUUCUCcaGCUGGu-GGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 79545 0.67 0.965348
Target:  5'- gGAGAAGGcGGUCGAUgcggcgcagcggCGCuuCCUGGCCGAg -3'
miRNA:   3'- -CUUUUCU-CCAGCUG------------GUG--GGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 32074 0.67 0.968402
Target:  5'- cGAGGAGAacugccgCGACCGCUucgacucgCCGACCGAc -3'
miRNA:   3'- -CUUUUCUcca----GCUGGUGG--------GGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 112017 0.67 0.95107
Target:  5'- cGGGAGGAGGaCGaggaGCCcgaACCgCGGCCGAa -3'
miRNA:   3'- -CUUUUCUCCaGC----UGG---UGGgGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 151970 0.67 0.965348
Target:  5'- -----cAGGuUCGugCGCCCCG-CCGGc -3'
miRNA:   3'- cuuuucUCC-AGCugGUGGGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 79643 0.67 0.968402
Target:  5'- ----cGAGGaCGACCGCUCCGuguCCa- -3'
miRNA:   3'- cuuuuCUCCaGCUGGUGGGGCu--GGcu -5'
16046 3' -54.9 NC_004065.1 + 106977 0.67 0.954958
Target:  5'- ----cGAGGUCGGCCAUgCUcGCCGc -3'
miRNA:   3'- cuuuuCUCCAGCUGGUGgGGcUGGCu -5'
16046 3' -54.9 NC_004065.1 + 78649 0.67 0.954958
Target:  5'- --cAAGAGaUCGGCCGCCagcgcagCGGCCGGc -3'
miRNA:   3'- cuuUUCUCcAGCUGGUGGg------GCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.