miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 78607 1.09 0.006628
Target:  5'- aGAAAAGAGGUCGACCACCCCGACCGAc -3'
miRNA:   3'- -CUUUUCUCCAGCUGGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 208695 0.74 0.699434
Target:  5'- aGAAAAGAuGUUGACCGCCgCGcacGCCGAg -3'
miRNA:   3'- -CUUUUCUcCAGCUGGUGGgGC---UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 148848 0.73 0.718875
Target:  5'- ----cGAGG-CGGCCGCCgCGAUCGAg -3'
miRNA:   3'- cuuuuCUCCaGCUGGUGGgGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 119955 0.73 0.718875
Target:  5'- ---cAGAGGaCGGCCgugaGCCCCGACCuGAg -3'
miRNA:   3'- cuuuUCUCCaGCUGG----UGGGGCUGG-CU- -5'
16046 3' -54.9 NC_004065.1 + 101432 0.73 0.756847
Target:  5'- gGAGAAGAGGUCG-CCGCCggCgGACCc- -3'
miRNA:   3'- -CUUUUCUCCAGCuGGUGG--GgCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 102007 0.71 0.821471
Target:  5'- aGGAAGAGGUCGuaguuggcgcggcggGCCACCUcggugacccgcggCGGCCGGg -3'
miRNA:   3'- cUUUUCUCCAGC---------------UGGUGGG-------------GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 175709 0.71 0.835384
Target:  5'- cGggGAGaAGGUCGACCACgCUuauagucugCGugCGAg -3'
miRNA:   3'- -CuuUUC-UCCAGCUGGUG-GG---------GCugGCU- -5'
16046 3' -54.9 NC_004065.1 + 120825 0.71 0.835384
Target:  5'- aGGAAGAGGcCGaggcGCCGCCgCCGGCCu- -3'
miRNA:   3'- cUUUUCUCCaGC----UGGUGG-GGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 146735 0.71 0.843334
Target:  5'- cGAGGcAGcGGUCGGCCGCCgCGagGCCGGu -3'
miRNA:   3'- -CUUU-UCuCCAGCUGGUGGgGC--UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 56047 0.71 0.843334
Target:  5'- cGGAGGGuucgcgccccAGGUCgugGACCACCCCGAUggCGAu -3'
miRNA:   3'- -CUUUUC----------UCCAG---CUGGUGGGGCUG--GCU- -5'
16046 3' -54.9 NC_004065.1 + 162553 0.71 0.843334
Target:  5'- -uGAAGucGUCGcacacguacaccGCCGCCUCGGCCGAc -3'
miRNA:   3'- cuUUUCucCAGC------------UGGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 205056 0.7 0.858684
Target:  5'- ----cGAGGgaCGcCCACCCaCGACCGAc -3'
miRNA:   3'- cuuuuCUCCa-GCuGGUGGG-GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 146529 0.7 0.866071
Target:  5'- cGAGAucaGGuccuuGGUCGGCCugCCCGACa-- -3'
miRNA:   3'- -CUUU---UCu----CCAGCUGGugGGGCUGgcu -5'
16046 3' -54.9 NC_004065.1 + 65465 0.7 0.866071
Target:  5'- -cGAAGcGGUCGgcGCCGCCgCCGGCuCGAc -3'
miRNA:   3'- cuUUUCuCCAGC--UGGUGG-GGCUG-GCU- -5'
16046 3' -54.9 NC_004065.1 + 94456 0.7 0.871124
Target:  5'- cGAAGGAGGUgaCGGCCGCcuccccgucguccgCCCGuCCGAc -3'
miRNA:   3'- cUUUUCUCCA--GCUGGUG--------------GGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 109531 0.7 0.873259
Target:  5'- aAGAGGGGGUCGAUgaACCCCGGauuuagCGAg -3'
miRNA:   3'- cUUUUCUCCAGCUGg-UGGGGCUg-----GCU- -5'
16046 3' -54.9 NC_004065.1 + 102876 0.7 0.873259
Target:  5'- --cGAGAGGgCGAUCGCCgCCG-CCGGu -3'
miRNA:   3'- cuuUUCUCCaGCUGGUGG-GGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 115076 0.7 0.873259
Target:  5'- ---uGGAGGcCGGCgGCgCCGACUGAu -3'
miRNA:   3'- cuuuUCUCCaGCUGgUGgGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 82926 0.7 0.880243
Target:  5'- -cGAAGAGcUCGGCCcagACCCUGGCCa- -3'
miRNA:   3'- cuUUUCUCcAGCUGG---UGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 23186 0.7 0.887017
Target:  5'- --cGAGcAGGUCGGCCccgccgAUCCCGcCCGAa -3'
miRNA:   3'- cuuUUC-UCCAGCUGG------UGGGGCuGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.