miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 207958 0.69 0.893578
Target:  5'- -----cGGGUUgGGCCGCCgCGACCGAc -3'
miRNA:   3'- cuuuucUCCAG-CUGGUGGgGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 78399 0.69 0.899923
Target:  5'- aGGGAGAGGaaCGGgaCGCCgCCGACCGAg -3'
miRNA:   3'- cUUUUCUCCa-GCUg-GUGG-GGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 90134 0.69 0.906048
Target:  5'- ---cGGAGGccccgCGGCCACCUCGuCCGu -3'
miRNA:   3'- cuuuUCUCCa----GCUGGUGGGGCuGGCu -5'
16046 3' -54.9 NC_004065.1 + 187436 0.69 0.911951
Target:  5'- uGAGGAGGGGUCG-UUAUCCUuGCCGGa -3'
miRNA:   3'- -CUUUUCUCCAGCuGGUGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 149707 0.69 0.91763
Target:  5'- ---cGGGGGgccgCGGCCGCgCCGGCCc- -3'
miRNA:   3'- cuuuUCUCCa---GCUGGUGgGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 223249 0.68 0.927798
Target:  5'- uGGAAGAGGUCgguacacagcgagGACCACgaggaCCGACCcGAg -3'
miRNA:   3'- cUUUUCUCCAG-------------CUGGUGg----GGCUGG-CU- -5'
16046 3' -54.9 NC_004065.1 + 97607 0.68 0.933312
Target:  5'- cGAAGGAGGcCG-CCGCCgCuGCCGAa -3'
miRNA:   3'- cUUUUCUCCaGCuGGUGGgGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 35552 0.68 0.935249
Target:  5'- aGAGAGGAGGcgugagcggCGgcgccgccgugcccaACCGCUUCGACCGAg -3'
miRNA:   3'- -CUUUUCUCCa--------GC---------------UGGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 207715 0.68 0.940844
Target:  5'- ----cGGGGUCGucaacgucaccguCCACCCC-ACCGAc -3'
miRNA:   3'- cuuuuCUCCAGCu------------GGUGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 130929 0.68 0.942637
Target:  5'- gGAAGAGAcucuuguuGGUCGACggCACCCCcAUCGGc -3'
miRNA:   3'- -CUUUUCU--------CCAGCUG--GUGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 172486 0.68 0.942637
Target:  5'- -cAGAGAGcUCGGgCACCUCGcACCGGa -3'
miRNA:   3'- cuUUUCUCcAGCUgGUGGGGC-UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 88818 0.68 0.942637
Target:  5'- ----uGAGGUgCGGuCCAcCCCCGACCc- -3'
miRNA:   3'- cuuuuCUCCA-GCU-GGU-GGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 66280 0.68 0.946964
Target:  5'- -cGAGGGGGaaagCGACCaguaaaACCCCGAUCa- -3'
miRNA:   3'- cuUUUCUCCa---GCUGG------UGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 151182 0.68 0.946964
Target:  5'- gGggGAGAGGUCcaggcacguGugCugCCgGugCGAc -3'
miRNA:   3'- -CuuUUCUCCAG---------CugGugGGgCugGCU- -5'
16046 3' -54.9 NC_004065.1 + 207981 0.68 0.946964
Target:  5'- ---cGGAGGgauaccgCGGCCugCCCGggGCCGu -3'
miRNA:   3'- cuuuUCUCCa------GCUGGugGGGC--UGGCu -5'
16046 3' -54.9 NC_004065.1 + 227257 0.68 0.948633
Target:  5'- aGAuGAGAGGUcgucccggaugagacCGACC-CCCCGACg-- -3'
miRNA:   3'- -CUuUUCUCCA---------------GCUGGuGGGGCUGgcu -5'
16046 3' -54.9 NC_004065.1 + 52936 0.67 0.95107
Target:  5'- ----cGAGGgu-GCCACCCCGugCGc -3'
miRNA:   3'- cuuuuCUCCagcUGGUGGGGCugGCu -5'
16046 3' -54.9 NC_004065.1 + 112017 0.67 0.95107
Target:  5'- cGGGAGGAGGaCGaggaGCCcgaACCgCGGCCGAa -3'
miRNA:   3'- -CUUUUCUCCaGC----UGG---UGGgGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 223140 0.67 0.954958
Target:  5'- uAGAuGAGGgCGAgCAUCCCGGCCu- -3'
miRNA:   3'- cUUUuCUCCaGCUgGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 78649 0.67 0.954958
Target:  5'- --cAAGAGaUCGGCCGCCagcgcagCGGCCGGc -3'
miRNA:   3'- cuuUUCUCcAGCUGGUGGg------GCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.