miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 120612 0.66 0.975684
Target:  5'- ----cGAGGaUCGAguagcucguggcguCCGCCgCGGCCGAc -3'
miRNA:   3'- cuuuuCUCC-AGCU--------------GGUGGgGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 185148 0.66 0.973927
Target:  5'- cGAAcGGAGG-CGuCCugCUCGAgCGAg -3'
miRNA:   3'- -CUUuUCUCCaGCuGGugGGGCUgGCU- -5'
16046 3' -54.9 NC_004065.1 + 74141 0.66 0.973927
Target:  5'- ----cGAGG-CGGgUGCCCgGGCCGAg -3'
miRNA:   3'- cuuuuCUCCaGCUgGUGGGgCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 176795 0.66 0.973927
Target:  5'- uGAGgcGAGGcgCGugCGCCa-GACCGAu -3'
miRNA:   3'- -CUUuuCUCCa-GCugGUGGggCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 81606 0.66 0.973927
Target:  5'- -----cAGG-CGACCAUgCUGGCCGAg -3'
miRNA:   3'- cuuuucUCCaGCUGGUGgGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 61046 0.66 0.973927
Target:  5'- ----cGAGGUCcGCCGCgCUGACgGAc -3'
miRNA:   3'- cuuuuCUCCAGcUGGUGgGGCUGgCU- -5'
16046 3' -54.9 NC_004065.1 + 183285 0.66 0.97126
Target:  5'- gGAGGAGAGcagcgCGugCGCCUCGugCGc -3'
miRNA:   3'- -CUUUUCUCca---GCugGUGGGGCugGCu -5'
16046 3' -54.9 NC_004065.1 + 53433 0.66 0.97126
Target:  5'- -------cGUCGuucUCGCCCCGACCGAc -3'
miRNA:   3'- cuuuucucCAGCu--GGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 107552 0.66 0.970423
Target:  5'- -----cGGGUCGugcgcuaccgggacGCCACCCUGACCc- -3'
miRNA:   3'- cuuuucUCCAGC--------------UGGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 19074 0.66 0.970423
Target:  5'- -cGAGGAGGa-GACCGCgCCCagguucgggucacuGACCGAg -3'
miRNA:   3'- cuUUUCUCCagCUGGUG-GGG--------------CUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 32074 0.67 0.968402
Target:  5'- cGAGGAGAacugccgCGACCGCUucgacucgCCGACCGAc -3'
miRNA:   3'- -CUUUUCUcca----GCUGGUGG--------GGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 79643 0.67 0.968402
Target:  5'- ----cGAGGaCGACCGCUCCGuguCCa- -3'
miRNA:   3'- cuuuuCUCCaGCUGGUGGGGCu--GGcu -5'
16046 3' -54.9 NC_004065.1 + 164705 0.67 0.965348
Target:  5'- aGAAAGGugauguGGUCcGCCGCCUCG-CUGAa -3'
miRNA:   3'- -CUUUUCu-----CCAGcUGGUGGGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 151970 0.67 0.965348
Target:  5'- -----cAGGuUCGugCGCCCCG-CCGGc -3'
miRNA:   3'- cuuuucUCC-AGCugGUGGGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 79545 0.67 0.965348
Target:  5'- gGAGAAGGcGGUCGAUgcggcgcagcggCGCuuCCUGGCCGAg -3'
miRNA:   3'- -CUUUUCU-CCAGCUG------------GUG--GGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 115541 0.67 0.962093
Target:  5'- gGAGAGGGGGaUCGAaaguaCCGCCaCCG-CCGc -3'
miRNA:   3'- -CUUUUCUCC-AGCU-----GGUGG-GGCuGGCu -5'
16046 3' -54.9 NC_004065.1 + 148183 0.67 0.962093
Target:  5'- -----cGGGcCGugCGCCCCGAuccCCGAc -3'
miRNA:   3'- cuuuucUCCaGCugGUGGGGCU---GGCU- -5'
16046 3' -54.9 NC_004065.1 + 182254 0.67 0.961756
Target:  5'- --cGAGGGGcuccucgUCGGCCACCCCuccugcccGGCCa- -3'
miRNA:   3'- cuuUUCUCC-------AGCUGGUGGGG--------CUGGcu -5'
16046 3' -54.9 NC_004065.1 + 47397 0.67 0.958631
Target:  5'- aGGAAAGAG--CGACCuuCCCCGGCUa- -3'
miRNA:   3'- -CUUUUCUCcaGCUGGu-GGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 78649 0.67 0.954958
Target:  5'- --cAAGAGaUCGGCCGCCagcgcagCGGCCGGc -3'
miRNA:   3'- cuuUUCUCcAGCUGGUGGg------GCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.