miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 8308 0.66 0.976409
Target:  5'- ---uAGcGGUCGugUACCUcagaCGGCCGAa -3'
miRNA:   3'- cuuuUCuCCAGCugGUGGG----GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 17522 0.66 0.976409
Target:  5'- ---cGGAGGUCGugCGgCCCGAa--- -3'
miRNA:   3'- cuuuUCUCCAGCugGUgGGGCUggcu -5'
16046 3' -54.9 NC_004065.1 + 19074 0.66 0.970423
Target:  5'- -cGAGGAGGa-GACCGCgCCCagguucgggucacuGACCGAg -3'
miRNA:   3'- cuUUUCUCCagCUGGUG-GGG--------------CUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 23186 0.7 0.887017
Target:  5'- --cGAGcAGGUCGGCCccgccgAUCCCGcCCGAa -3'
miRNA:   3'- cuuUUC-UCCAGCUGG------UGGGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 32074 0.67 0.968402
Target:  5'- cGAGGAGAacugccgCGACCGCUucgacucgCCGACCGAc -3'
miRNA:   3'- -CUUUUCUcca----GCUGGUGG--------GGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 35552 0.68 0.935249
Target:  5'- aGAGAGGAGGcgugagcggCGgcgccgccgugcccaACCGCUUCGACCGAg -3'
miRNA:   3'- -CUUUUCUCCa--------GC---------------UGGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 47397 0.67 0.958631
Target:  5'- aGGAAAGAG--CGACCuuCCCCGGCUa- -3'
miRNA:   3'- -CUUUUCUCcaGCUGGu-GGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 51573 0.66 0.980225
Target:  5'- cGAuuGGAGGcgaaccgccacucuUCGGCgACCCCGAagaUGAu -3'
miRNA:   3'- -CUuuUCUCC--------------AGCUGgUGGGGCUg--GCU- -5'
16046 3' -54.9 NC_004065.1 + 52936 0.67 0.95107
Target:  5'- ----cGAGGgu-GCCACCCCGugCGc -3'
miRNA:   3'- cuuuuCUCCagcUGGUGGGGCugGCu -5'
16046 3' -54.9 NC_004065.1 + 53433 0.66 0.97126
Target:  5'- -------cGUCGuucUCGCCCCGACCGAc -3'
miRNA:   3'- cuuuucucCAGCu--GGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 54321 0.66 0.978491
Target:  5'- ----cGuGGUCGACCuucuCCCCGuggucucaggugaACCGGa -3'
miRNA:   3'- cuuuuCuCCAGCUGGu---GGGGC-------------UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 56047 0.71 0.843334
Target:  5'- cGGAGGGuucgcgccccAGGUCgugGACCACCCCGAUggCGAu -3'
miRNA:   3'- -CUUUUC----------UCCAG---CUGGUGGGGCUG--GCU- -5'
16046 3' -54.9 NC_004065.1 + 59680 0.66 0.976409
Target:  5'- ------cGGUCGA-CAUCCCGACCa- -3'
miRNA:   3'- cuuuucuCCAGCUgGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 61046 0.66 0.973927
Target:  5'- ----cGAGGUCcGCCGCgCUGACgGAc -3'
miRNA:   3'- cuuuuCUCCAGcUGGUGgGGCUGgCU- -5'
16046 3' -54.9 NC_004065.1 + 65465 0.7 0.866071
Target:  5'- -cGAAGcGGUCGgcGCCGCCgCCGGCuCGAc -3'
miRNA:   3'- cuUUUCuCCAGC--UGGUGG-GGCUG-GCU- -5'
16046 3' -54.9 NC_004065.1 + 66280 0.68 0.946964
Target:  5'- -cGAGGGGGaaagCGACCaguaaaACCCCGAUCa- -3'
miRNA:   3'- cuUUUCUCCa---GCUGG------UGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 67668 0.67 0.954958
Target:  5'- cGAAGAGGGGUUuucCCGgUCCGAUCGGc -3'
miRNA:   3'- -CUUUUCUCCAGcu-GGUgGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 67701 0.66 0.980848
Target:  5'- -uGAGGGGGUCGAgCACCgUCGguaucGCCGu -3'
miRNA:   3'- cuUUUCUCCAGCUgGUGG-GGC-----UGGCu -5'
16046 3' -54.9 NC_004065.1 + 68255 0.66 0.978714
Target:  5'- aGAAAGuccgugaccGGGUCGGCCgaaggaACCCC-ACCGGc -3'
miRNA:   3'- cUUUUC---------UCCAGCUGG------UGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 74141 0.66 0.973927
Target:  5'- ----cGAGG-CGGgUGCCCgGGCCGAg -3'
miRNA:   3'- cuuuuCUCCaGCUgGUGGGgCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.