miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 78399 0.69 0.899923
Target:  5'- aGGGAGAGGaaCGGgaCGCCgCCGACCGAg -3'
miRNA:   3'- cUUUUCUCCa-GCUg-GUGG-GGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 78607 1.09 0.006628
Target:  5'- aGAAAAGAGGUCGACCACCCCGACCGAc -3'
miRNA:   3'- -CUUUUCUCCAGCUGGUGGGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 78649 0.67 0.954958
Target:  5'- --cAAGAGaUCGGCCGCCagcgcagCGGCCGGc -3'
miRNA:   3'- cuuUUCUCcAGCUGGUGGg------GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 79545 0.67 0.965348
Target:  5'- gGAGAAGGcGGUCGAUgcggcgcagcggCGCuuCCUGGCCGAg -3'
miRNA:   3'- -CUUUUCU-CCAGCUG------------GUG--GGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 79643 0.67 0.968402
Target:  5'- ----cGAGGaCGACCGCUCCGuguCCa- -3'
miRNA:   3'- cuuuuCUCCaGCUGGUGGGGCu--GGcu -5'
16046 3' -54.9 NC_004065.1 + 81606 0.66 0.973927
Target:  5'- -----cAGG-CGACCAUgCUGGCCGAg -3'
miRNA:   3'- cuuuucUCCaGCUGGUGgGGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 82926 0.7 0.880243
Target:  5'- -cGAAGAGcUCGGCCcagACCCUGGCCa- -3'
miRNA:   3'- cuUUUCUCcAGCUGG---UGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 84245 0.66 0.976409
Target:  5'- ----uGAGGaucugugCGAgCGCCCgCGACCGGc -3'
miRNA:   3'- cuuuuCUCCa------GCUgGUGGG-GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 88818 0.68 0.942637
Target:  5'- ----uGAGGUgCGGuCCAcCCCCGACCc- -3'
miRNA:   3'- cuuuuCUCCA-GCU-GGU-GGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 90134 0.69 0.906048
Target:  5'- ---cGGAGGccccgCGGCCACCUCGuCCGu -3'
miRNA:   3'- cuuuUCUCCa----GCUGGUGGGGCuGGCu -5'
16046 3' -54.9 NC_004065.1 + 94456 0.7 0.871124
Target:  5'- cGAAGGAGGUgaCGGCCGCcuccccgucguccgCCCGuCCGAc -3'
miRNA:   3'- cUUUUCUCCA--GCUGGUG--------------GGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 97607 0.68 0.933312
Target:  5'- cGAAGGAGGcCG-CCGCCgCuGCCGAa -3'
miRNA:   3'- cUUUUCUCCaGCuGGUGGgGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 101432 0.73 0.756847
Target:  5'- gGAGAAGAGGUCG-CCGCCggCgGACCc- -3'
miRNA:   3'- -CUUUUCUCCAGCuGGUGG--GgCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 102007 0.71 0.821471
Target:  5'- aGGAAGAGGUCGuaguuggcgcggcggGCCACCUcggugacccgcggCGGCCGGg -3'
miRNA:   3'- cUUUUCUCCAGC---------------UGGUGGG-------------GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 102876 0.7 0.873259
Target:  5'- --cGAGAGGgCGAUCGCCgCCG-CCGGu -3'
miRNA:   3'- cuuUUCUCCaGCUGGUGG-GGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 106977 0.67 0.954958
Target:  5'- ----cGAGGUCGGCCAUgCUcGCCGc -3'
miRNA:   3'- cuuuuCUCCAGCUGGUGgGGcUGGCu -5'
16046 3' -54.9 NC_004065.1 + 107552 0.66 0.970423
Target:  5'- -----cGGGUCGugcgcuaccgggacGCCACCCUGACCc- -3'
miRNA:   3'- cuuuucUCCAGC--------------UGGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 109461 0.66 0.977352
Target:  5'- ---cGGAGGUcccgcccgcucgcgcCGACCGCCgCCGgcacACCGGa -3'
miRNA:   3'- cuuuUCUCCA---------------GCUGGUGG-GGC----UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 109531 0.7 0.873259
Target:  5'- aAGAGGGGGUCGAUgaACCCCGGauuuagCGAg -3'
miRNA:   3'- cUUUUCUCCAGCUGg-UGGGGCUg-----GCU- -5'
16046 3' -54.9 NC_004065.1 + 112017 0.67 0.95107
Target:  5'- cGGGAGGAGGaCGaggaGCCcgaACCgCGGCCGAa -3'
miRNA:   3'- -CUUUUCUCCaGC----UGG---UGGgGCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.