miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 227257 0.68 0.948633
Target:  5'- aGAuGAGAGGUcgucccggaugagacCGACC-CCCCGACg-- -3'
miRNA:   3'- -CUuUUCUCCA---------------GCUGGuGGGGCUGgcu -5'
16046 3' -54.9 NC_004065.1 + 223249 0.68 0.927798
Target:  5'- uGGAAGAGGUCgguacacagcgagGACCACgaggaCCGACCcGAg -3'
miRNA:   3'- cUUUUCUCCAG-------------CUGGUGg----GGCUGG-CU- -5'
16046 3' -54.9 NC_004065.1 + 223140 0.67 0.954958
Target:  5'- uAGAuGAGGgCGAgCAUCCCGGCCu- -3'
miRNA:   3'- cUUUuCUCCaGCUgGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 211479 0.66 0.980848
Target:  5'- -cGGAGAGGUCGuCgGCgUCGAguCCGAa -3'
miRNA:   3'- cuUUUCUCCAGCuGgUGgGGCU--GGCU- -5'
16046 3' -54.9 NC_004065.1 + 208695 0.74 0.699434
Target:  5'- aGAAAAGAuGUUGACCGCCgCGcacGCCGAg -3'
miRNA:   3'- -CUUUUCUcCAGCUGGUGGgGC---UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 207981 0.68 0.946964
Target:  5'- ---cGGAGGgauaccgCGGCCugCCCGggGCCGu -3'
miRNA:   3'- cuuuUCUCCa------GCUGGugGGGC--UGGCu -5'
16046 3' -54.9 NC_004065.1 + 207958 0.69 0.893578
Target:  5'- -----cGGGUUgGGCCGCCgCGACCGAc -3'
miRNA:   3'- cuuuucUCCAG-CUGGUGGgGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 207715 0.68 0.940844
Target:  5'- ----cGGGGUCGucaacgucaccguCCACCCC-ACCGAc -3'
miRNA:   3'- cuuuuCUCCAGCu------------GGUGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 205056 0.7 0.858684
Target:  5'- ----cGAGGgaCGcCCACCCaCGACCGAc -3'
miRNA:   3'- cuuuuCUCCa-GCuGGUGGG-GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 202149 0.66 0.976409
Target:  5'- cGGAcGGAGGUCccggccguCCAUCUCGACCa- -3'
miRNA:   3'- -CUUuUCUCCAGcu------GGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 198847 0.66 0.976409
Target:  5'- cGAAAGGGGaccaGACCaugcuaGCUCCGGCCGc -3'
miRNA:   3'- cUUUUCUCCag--CUGG------UGGGGCUGGCu -5'
16046 3' -54.9 NC_004065.1 + 187436 0.69 0.911951
Target:  5'- uGAGGAGGGGUCG-UUAUCCUuGCCGGa -3'
miRNA:   3'- -CUUUUCUCCAGCuGGUGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 185148 0.66 0.973927
Target:  5'- cGAAcGGAGG-CGuCCugCUCGAgCGAg -3'
miRNA:   3'- -CUUuUCUCCaGCuGGugGGGCUgGCU- -5'
16046 3' -54.9 NC_004065.1 + 183285 0.66 0.97126
Target:  5'- gGAGGAGAGcagcgCGugCGCCUCGugCGc -3'
miRNA:   3'- -CUUUUCUCca---GCugGUGGGGCugGCu -5'
16046 3' -54.9 NC_004065.1 + 182254 0.67 0.961756
Target:  5'- --cGAGGGGcuccucgUCGGCCACCCCuccugcccGGCCa- -3'
miRNA:   3'- cuuUUCUCC-------AGCUGGUGGGG--------CUGGcu -5'
16046 3' -54.9 NC_004065.1 + 176795 0.66 0.973927
Target:  5'- uGAGgcGAGGcgCGugCGCCa-GACCGAu -3'
miRNA:   3'- -CUUuuCUCCa-GCugGUGGggCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 175709 0.71 0.835384
Target:  5'- cGggGAGaAGGUCGACCACgCUuauagucugCGugCGAg -3'
miRNA:   3'- -CuuUUC-UCCAGCUGGUG-GG---------GCugGCU- -5'
16046 3' -54.9 NC_004065.1 + 172486 0.68 0.942637
Target:  5'- -cAGAGAGcUCGGgCACCUCGcACCGGa -3'
miRNA:   3'- cuUUUCUCcAGCUgGUGGGGC-UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 164705 0.67 0.965348
Target:  5'- aGAAAGGugauguGGUCcGCCGCCUCG-CUGAa -3'
miRNA:   3'- -CUUUUCu-----CCAGcUGGUGGGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 162553 0.71 0.843334
Target:  5'- -uGAAGucGUCGcacacguacaccGCCGCCUCGGCCGAc -3'
miRNA:   3'- cuUUUCucCAGC------------UGGUGGGGCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.