miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 3' -54.9 NC_004065.1 + 151970 0.67 0.965348
Target:  5'- -----cAGGuUCGugCGCCCCG-CCGGc -3'
miRNA:   3'- cuuuucUCC-AGCugGUGGGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 207715 0.68 0.940844
Target:  5'- ----cGGGGUCGucaacgucaccguCCACCCC-ACCGAc -3'
miRNA:   3'- cuuuuCUCCAGCu------------GGUGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 88818 0.68 0.942637
Target:  5'- ----uGAGGUgCGGuCCAcCCCCGACCc- -3'
miRNA:   3'- cuuuuCUCCA-GCU-GGU-GGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 172486 0.68 0.942637
Target:  5'- -cAGAGAGcUCGGgCACCUCGcACCGGa -3'
miRNA:   3'- cuUUUCUCcAGCUgGUGGGGC-UGGCU- -5'
16046 3' -54.9 NC_004065.1 + 130929 0.68 0.942637
Target:  5'- gGAAGAGAcucuuguuGGUCGACggCACCCCcAUCGGc -3'
miRNA:   3'- -CUUUUCU--------CCAGCUG--GUGGGGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 227257 0.68 0.948633
Target:  5'- aGAuGAGAGGUcgucccggaugagacCGACC-CCCCGACg-- -3'
miRNA:   3'- -CUuUUCUCCA---------------GCUGGuGGGGCUGgcu -5'
16046 3' -54.9 NC_004065.1 + 223140 0.67 0.954958
Target:  5'- uAGAuGAGGgCGAgCAUCCCGGCCu- -3'
miRNA:   3'- cUUUuCUCCaGCUgGUGGGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 78649 0.67 0.954958
Target:  5'- --cAAGAGaUCGGCCGCCagcgcagCGGCCGGc -3'
miRNA:   3'- cuuUUCUCcAGCUGGUGGg------GCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 106977 0.67 0.954958
Target:  5'- ----cGAGGUCGGCCAUgCUcGCCGc -3'
miRNA:   3'- cuuuuCUCCAGCUGGUGgGGcUGGCu -5'
16046 3' -54.9 NC_004065.1 + 97607 0.68 0.933312
Target:  5'- cGAAGGAGGcCG-CCGCCgCuGCCGAa -3'
miRNA:   3'- cUUUUCUCCaGCuGGUGGgGcUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 223249 0.68 0.927798
Target:  5'- uGGAAGAGGUCgguacacagcgagGACCACgaggaCCGACCcGAg -3'
miRNA:   3'- cUUUUCUCCAG-------------CUGGUGg----GGCUGG-CU- -5'
16046 3' -54.9 NC_004065.1 + 149707 0.69 0.91763
Target:  5'- ---cGGGGGgccgCGGCCGCgCCGGCCc- -3'
miRNA:   3'- cuuuUCUCCa---GCUGGUGgGGCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 101432 0.73 0.756847
Target:  5'- gGAGAAGAGGUCG-CCGCCggCgGACCc- -3'
miRNA:   3'- -CUUUUCUCCAGCuGGUGG--GgCUGGcu -5'
16046 3' -54.9 NC_004065.1 + 175709 0.71 0.835384
Target:  5'- cGggGAGaAGGUCGACCACgCUuauagucugCGugCGAg -3'
miRNA:   3'- -CuuUUC-UCCAGCUGGUG-GG---------GCugGCU- -5'
16046 3' -54.9 NC_004065.1 + 56047 0.71 0.843334
Target:  5'- cGGAGGGuucgcgccccAGGUCgugGACCACCCCGAUggCGAu -3'
miRNA:   3'- -CUUUUC----------UCCAG---CUGGUGGGGCUG--GCU- -5'
16046 3' -54.9 NC_004065.1 + 146529 0.7 0.866071
Target:  5'- cGAGAucaGGuccuuGGUCGGCCugCCCGACa-- -3'
miRNA:   3'- -CUUU---UCu----CCAGCUGGugGGGCUGgcu -5'
16046 3' -54.9 NC_004065.1 + 23186 0.7 0.887017
Target:  5'- --cGAGcAGGUCGGCCccgccgAUCCCGcCCGAa -3'
miRNA:   3'- cuuUUC-UCCAGCUGG------UGGGGCuGGCU- -5'
16046 3' -54.9 NC_004065.1 + 78399 0.69 0.899923
Target:  5'- aGGGAGAGGaaCGGgaCGCCgCCGACCGAg -3'
miRNA:   3'- cUUUUCUCCa-GCUg-GUGG-GGCUGGCU- -5'
16046 3' -54.9 NC_004065.1 + 90134 0.69 0.906048
Target:  5'- ---cGGAGGccccgCGGCCACCUCGuCCGu -3'
miRNA:   3'- cuuuUCUCCa----GCUGGUGGGGCuGGCu -5'
16046 3' -54.9 NC_004065.1 + 187436 0.69 0.911951
Target:  5'- uGAGGAGGGGUCG-UUAUCCUuGCCGGa -3'
miRNA:   3'- -CUUUUCUCCAGCuGGUGGGGcUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.