Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16046 | 3' | -54.9 | NC_004065.1 | + | 208695 | 0.74 | 0.699434 |
Target: 5'- aGAAAAGAuGUUGACCGCCgCGcacGCCGAg -3' miRNA: 3'- -CUUUUCUcCAGCUGGUGGgGC---UGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 207981 | 0.68 | 0.946964 |
Target: 5'- ---cGGAGGgauaccgCGGCCugCCCGggGCCGu -3' miRNA: 3'- cuuuUCUCCa------GCUGGugGGGC--UGGCu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 52936 | 0.67 | 0.95107 |
Target: 5'- ----cGAGGgu-GCCACCCCGugCGc -3' miRNA: 3'- cuuuuCUCCagcUGGUGGGGCugGCu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 211479 | 0.66 | 0.980848 |
Target: 5'- -cGGAGAGGUCGuCgGCgUCGAguCCGAa -3' miRNA: 3'- cuUUUCUCCAGCuGgUGgGGCU--GGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 120825 | 0.71 | 0.835384 |
Target: 5'- aGGAAGAGGcCGaggcGCCGCCgCCGGCCu- -3' miRNA: 3'- cUUUUCUCCaGC----UGGUGG-GGCUGGcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 162553 | 0.71 | 0.843334 |
Target: 5'- -uGAAGucGUCGcacacguacaccGCCGCCUCGGCCGAc -3' miRNA: 3'- cuUUUCucCAGC------------UGGUGGGGCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 205056 | 0.7 | 0.858684 |
Target: 5'- ----cGAGGgaCGcCCACCCaCGACCGAc -3' miRNA: 3'- cuuuuCUCCa-GCuGGUGGG-GCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 65465 | 0.7 | 0.866071 |
Target: 5'- -cGAAGcGGUCGgcGCCGCCgCCGGCuCGAc -3' miRNA: 3'- cuUUUCuCCAGC--UGGUGG-GGCUG-GCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 109531 | 0.7 | 0.873259 |
Target: 5'- aAGAGGGGGUCGAUgaACCCCGGauuuagCGAg -3' miRNA: 3'- cUUUUCUCCAGCUGg-UGGGGCUg-----GCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 66280 | 0.68 | 0.946964 |
Target: 5'- -cGAGGGGGaaagCGACCaguaaaACCCCGAUCa- -3' miRNA: 3'- cuUUUCUCCa---GCUGG------UGGGGCUGGcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 82926 | 0.7 | 0.880243 |
Target: 5'- -cGAAGAGcUCGGCCcagACCCUGGCCa- -3' miRNA: 3'- cuUUUCUCcAGCUGG---UGGGGCUGGcu -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 115076 | 0.7 | 0.873259 |
Target: 5'- ---uGGAGGcCGGCgGCgCCGACUGAu -3' miRNA: 3'- cuuuUCUCCaGCUGgUGgGGCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 119955 | 0.73 | 0.718875 |
Target: 5'- ---cAGAGGaCGGCCgugaGCCCCGACCuGAg -3' miRNA: 3'- cuuuUCUCCaGCUGG----UGGGGCUGG-CU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 207958 | 0.69 | 0.893578 |
Target: 5'- -----cGGGUUgGGCCGCCgCGACCGAc -3' miRNA: 3'- cuuuucUCCAG-CUGGUGGgGCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 148848 | 0.73 | 0.718875 |
Target: 5'- ----cGAGG-CGGCCGCCgCGAUCGAg -3' miRNA: 3'- cuuuuCUCCaGCUGGUGGgGCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 94456 | 0.7 | 0.871124 |
Target: 5'- cGAAGGAGGUgaCGGCCGCcuccccgucguccgCCCGuCCGAc -3' miRNA: 3'- cUUUUCUCCA--GCUGGUG--------------GGGCuGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 35552 | 0.68 | 0.935249 |
Target: 5'- aGAGAGGAGGcgugagcggCGgcgccgccgugcccaACCGCUUCGACCGAg -3' miRNA: 3'- -CUUUUCUCCa--------GC---------------UGGUGGGGCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 151182 | 0.68 | 0.946964 |
Target: 5'- gGggGAGAGGUCcaggcacguGugCugCCgGugCGAc -3' miRNA: 3'- -CuuUUCUCCAG---------CugGugGGgCugGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 102007 | 0.71 | 0.821471 |
Target: 5'- aGGAAGAGGUCGuaguuggcgcggcggGCCACCUcggugacccgcggCGGCCGGg -3' miRNA: 3'- cUUUUCUCCAGC---------------UGGUGGG-------------GCUGGCU- -5' |
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16046 | 3' | -54.9 | NC_004065.1 | + | 146735 | 0.71 | 0.843334 |
Target: 5'- cGAGGcAGcGGUCGGCCGCCgCGagGCCGGu -3' miRNA: 3'- -CUUU-UCuCCAGCUGGUGGgGC--UGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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