miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 192118 0.66 0.878349
Target:  5'- uCGCgGCUaggaagaaaCAAGcGA-CGGCCGCCAGa -3'
miRNA:   3'- -GCGgUGG---------GUUCuCUaGCCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 159142 0.66 0.878349
Target:  5'- uCGCCugC-GAGuuGUCcagcagGGUCGCCAGCu -3'
miRNA:   3'- -GCGGugGgUUCucUAG------CCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 192721 0.66 0.878349
Target:  5'- uGCCGaCCGGGGGcUCuugaGGCCGCCgaaacuGGCg -3'
miRNA:   3'- gCGGUgGGUUCUCuAG----CCGGCGG------UCG- -5'
16046 5' -59.3 NC_004065.1 + 149703 0.66 0.878349
Target:  5'- --aCGCCgGGGGGccgCGGCCgcGCCGGCc -3'
miRNA:   3'- gcgGUGGgUUCUCua-GCCGG--CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 182881 0.66 0.878349
Target:  5'- aCGCCuucGCCCAcGAGcUCGGagaCCGaCGGCa -3'
miRNA:   3'- -GCGG---UGGGUuCUCuAGCC---GGCgGUCG- -5'
16046 5' -59.3 NC_004065.1 + 166481 0.66 0.877671
Target:  5'- cCGCCGCcaCCAAGAacacgcucgcggcGAUcuaCGGCCGCgAGg -3'
miRNA:   3'- -GCGGUG--GGUUCU-------------CUA---GCCGGCGgUCg -5'
16046 5' -59.3 NC_004065.1 + 35632 0.66 0.877671
Target:  5'- cCGCCGcucugucCCCAcAGGGAcgaagacCGGCCGCCGaucGCc -3'
miRNA:   3'- -GCGGU-------GGGU-UCUCUa------GCCGGCGGU---CG- -5'
16046 5' -59.3 NC_004065.1 + 35147 0.66 0.877671
Target:  5'- uGCCgaaGCCCAAGAcccuggucaggaaGAUCGuGuCCGCC-GCc -3'
miRNA:   3'- gCGG---UGGGUUCU-------------CUAGC-C-GGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 177996 0.66 0.871473
Target:  5'- cCGCU-CCCAAGAagucuggagGGUUGGCUGCCuGa -3'
miRNA:   3'- -GCGGuGGGUUCU---------CUAGCCGGCGGuCg -5'
16046 5' -59.3 NC_004065.1 + 77087 0.66 0.871473
Target:  5'- uGCCugCCGcuGGAGAUCGaCuCGCgCuGCa -3'
miRNA:   3'- gCGGugGGU--UCUCUAGCcG-GCG-GuCG- -5'
16046 5' -59.3 NC_004065.1 + 140457 0.66 0.871473
Target:  5'- gGuCCuuCCAGGAGAcgGGCCGCUAccGCa -3'
miRNA:   3'- gC-GGugGGUUCUCUagCCGGCGGU--CG- -5'
16046 5' -59.3 NC_004065.1 + 91820 0.66 0.871473
Target:  5'- aGCgCGgUCGAGAcGUCGGUCGCCcguGGCc -3'
miRNA:   3'- gCG-GUgGGUUCUcUAGCCGGCGG---UCG- -5'
16046 5' -59.3 NC_004065.1 + 213224 0.66 0.871473
Target:  5'- gGCgGCCguGGAcGAugguUCGGUCGUCGGUa -3'
miRNA:   3'- gCGgUGGguUCU-CU----AGCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 154613 0.66 0.871473
Target:  5'- gGUCAUCCGuGAGcucuUCGGgggcguCUGCCAGCa -3'
miRNA:   3'- gCGGUGGGUuCUCu---AGCC------GGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 120319 0.66 0.870774
Target:  5'- uGCCcCCCGAG-GGUCG-CCGCgcgaucuCGGCg -3'
miRNA:   3'- gCGGuGGGUUCuCUAGCcGGCG-------GUCG- -5'
16046 5' -59.3 NC_004065.1 + 166116 0.66 0.867253
Target:  5'- cCGCCugUUGaugaaucacgucggcAGAGAcgUCGG-CGCCGGCg -3'
miRNA:   3'- -GCGGugGGU---------------UCUCU--AGCCgGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 135180 0.66 0.864402
Target:  5'- gGaCUGCCCGAGGGAcugUUGGgCGCCGccGCc -3'
miRNA:   3'- gC-GGUGGGUUCUCU---AGCCgGCGGU--CG- -5'
16046 5' -59.3 NC_004065.1 + 153267 0.66 0.864402
Target:  5'- gCGCCGgaCGAuGAcga-GGCCGCCGGCg -3'
miRNA:   3'- -GCGGUggGUU-CUcuagCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 146824 0.66 0.864402
Target:  5'- gCGCacgggggACUCGAGAGcg-GGCCGCCGGg -3'
miRNA:   3'- -GCGg------UGGGUUCUCuagCCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 197506 0.66 0.864402
Target:  5'- gGCUAggucUCCGAGGGAccCGGCCGCgcgCGGUa -3'
miRNA:   3'- gCGGU----GGGUUCUCUa-GCCGGCG---GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.