Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16046 | 5' | -59.3 | NC_004065.1 | + | 142924 | 0.66 | 0.842076 |
Target: 5'- aCGCCGgCCGucGAGuucCGGCaccaggGCCAGCu -3' miRNA: 3'- -GCGGUgGGUu-CUCua-GCCGg-----CGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 81170 | 0.66 | 0.864402 |
Target: 5'- cCGCCGCCUccucGAUcgcggCGGCCGCCucguGGCc -3' miRNA: 3'- -GCGGUGGGuucuCUA-----GCCGGCGG----UCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 213224 | 0.66 | 0.871473 |
Target: 5'- gGCgGCCguGGAcGAugguUCGGUCGUCGGUa -3' miRNA: 3'- gCGgUGGguUCU-CU----AGCCGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 120173 | 0.66 | 0.857142 |
Target: 5'- uGCCACCUggGuGAggGGagcgaCGCCGcGCu -3' miRNA: 3'- gCGGUGGGuuCuCUagCCg----GCGGU-CG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 110830 | 0.66 | 0.849698 |
Target: 5'- uGCCAggcaCCAgugcGGGGcgCgGGCCGCCcGCg -3' miRNA: 3'- gCGGUg---GGU----UCUCuaG-CCGGCGGuCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 135180 | 0.66 | 0.864402 |
Target: 5'- gGaCUGCCCGAGGGAcugUUGGgCGCCGccGCc -3' miRNA: 3'- gC-GGUGGGUUCUCU---AGCCgGCGGU--CG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 159678 | 0.66 | 0.864402 |
Target: 5'- aGCUACCCGAGGcGcUCcucGCCGCCGucGCc -3' miRNA: 3'- gCGGUGGGUUCU-CuAGc--CGGCGGU--CG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 196679 | 0.66 | 0.857142 |
Target: 5'- aCGCCACCCAGcAGuuucAUCGGCUGguacuugaauCCGGg -3' miRNA: 3'- -GCGGUGGGUUcUC----UAGCCGGC----------GGUCg -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 120521 | 0.66 | 0.841304 |
Target: 5'- gCGCCGCUCGAcgaugucGAGGgucucCGGUgUGCCGGCg -3' miRNA: 3'- -GCGGUGGGUU-------CUCUa----GCCG-GCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 110403 | 0.66 | 0.842076 |
Target: 5'- aCGCCACggCCGAcGGcGUCuccuccGCCGCCGGCg -3' miRNA: 3'- -GCGGUG--GGUUcUC-UAGc-----CGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 86145 | 0.66 | 0.841304 |
Target: 5'- cCGCgCACCUGAcGAGAUccucuuugacgugCGGCaggauGCCGGCg -3' miRNA: 3'- -GCG-GUGGGUU-CUCUA-------------GCCGg----CGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 166116 | 0.66 | 0.867253 |
Target: 5'- cCGCCugUUGaugaaucacgucggcAGAGAcgUCGG-CGCCGGCg -3' miRNA: 3'- -GCGGugGGU---------------UCUCU--AGCCgGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 41044 | 0.66 | 0.842076 |
Target: 5'- aGCCGC---AGAGcUCgGGCCGCgCGGCg -3' miRNA: 3'- gCGGUGgguUCUCuAG-CCGGCG-GUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 159142 | 0.66 | 0.878349 |
Target: 5'- uCGCCugC-GAGuuGUCcagcagGGUCGCCAGCu -3' miRNA: 3'- -GCGGugGgUUCucUAG------CCGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 101428 | 0.66 | 0.857142 |
Target: 5'- gGUCGgagAAGAGGUC-GCCGCCGGCg -3' miRNA: 3'- gCGGUgggUUCUCUAGcCGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 75592 | 0.66 | 0.849698 |
Target: 5'- uCGCCGgCgGGGGGA--GGCCGCUGGg -3' miRNA: 3'- -GCGGUgGgUUCUCUagCCGGCGGUCg -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 77087 | 0.66 | 0.871473 |
Target: 5'- uGCCugCCGcuGGAGAUCGaCuCGCgCuGCa -3' miRNA: 3'- gCGGugGGU--UCUCUAGCcG-GCG-GuCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 198947 | 0.66 | 0.864402 |
Target: 5'- uCGCCGCCCG------UGGCCaCCAGCc -3' miRNA: 3'- -GCGGUGGGUucucuaGCCGGcGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 197506 | 0.66 | 0.864402 |
Target: 5'- gGCUAggucUCCGAGGGAccCGGCCGCgcgCGGUa -3' miRNA: 3'- gCGGU----GGGUUCUCUa-GCCGGCG---GUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 53458 | 0.66 | 0.857142 |
Target: 5'- gGUCguGCCCGAGAGGUUcaaGaCCGCCgAGCu -3' miRNA: 3'- gCGG--UGGGUUCUCUAGc--C-GGCGG-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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