miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 78641 1.12 0.001499
Target:  5'- cCGCCACCCAAGAGAUCGGCCGCCAGCg -3'
miRNA:   3'- -GCGGUGGGUUCUCUAGCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 136471 0.82 0.145903
Target:  5'- uGCCGCCUAAGAGcAUCGGCgGCUccGGCg -3'
miRNA:   3'- gCGGUGGGUUCUC-UAGCCGgCGG--UCG- -5'
16046 5' -59.3 NC_004065.1 + 116248 0.78 0.245885
Target:  5'- aGCCGCCCGAGucGGUCGucuGCCGCCgcGGCu -3'
miRNA:   3'- gCGGUGGGUUCu-CUAGC---CGGCGG--UCG- -5'
16046 5' -59.3 NC_004065.1 + 109818 0.78 0.275383
Target:  5'- gGuCCGCCCAAGaAGAUCGGCaggGCgAGCg -3'
miRNA:   3'- gC-GGUGGGUUC-UCUAGCCGg--CGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 213413 0.77 0.287953
Target:  5'- uGCCGCCgAAGAGAUCGcGuCCG-CAGCg -3'
miRNA:   3'- gCGGUGGgUUCUCUAGC-C-GGCgGUCG- -5'
16046 5' -59.3 NC_004065.1 + 162144 0.77 0.294405
Target:  5'- aGaCGCUCGGGcaaccuGAUCGGCCGCCGGCu -3'
miRNA:   3'- gCgGUGGGUUCu-----CUAGCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 90229 0.76 0.321336
Target:  5'- aGUUuCCCAAGAGGUCGGC-GUCGGCg -3'
miRNA:   3'- gCGGuGGGUUCUCUAGCCGgCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 89711 0.75 0.372789
Target:  5'- gCGCCACCCAcuuGGAGAUCuGcGCCGUCGu- -3'
miRNA:   3'- -GCGGUGGGU---UCUCUAG-C-CGGCGGUcg -5'
16046 5' -59.3 NC_004065.1 + 110204 0.75 0.388483
Target:  5'- cCGCCGCCCGucgAGAGGgaagagGGCuuCGCCGGCg -3'
miRNA:   3'- -GCGGUGGGU---UCUCUag----CCG--GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 229443 0.75 0.396491
Target:  5'- uGCCACCaCGGGguGGcgCuGCCGCCAGCc -3'
miRNA:   3'- gCGGUGG-GUUC--UCuaGcCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 165867 0.75 0.404604
Target:  5'- gCGUaACuCCGAGAccaGGUCGGCgGCCAGCg -3'
miRNA:   3'- -GCGgUG-GGUUCU---CUAGCCGgCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 75762 0.75 0.404604
Target:  5'- gCGCUgACCCGGGGGAggcggaggCGGCgGUCGGCg -3'
miRNA:   3'- -GCGG-UGGGUUCUCUa-------GCCGgCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 32459 0.74 0.420305
Target:  5'- aGCCGCaugcccaCCAGGucGUCGGCgCGCCAGUg -3'
miRNA:   3'- gCGGUG-------GGUUCucUAGCCG-GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 189859 0.74 0.43808
Target:  5'- uCGUCGCCgCGAGGGGUUugcuGCCGUCGGCa -3'
miRNA:   3'- -GCGGUGG-GUUCUCUAGc---CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 14707 0.74 0.446694
Target:  5'- cCGCCACCCAucAGAUCcacGCCGucacCCAGCa -3'
miRNA:   3'- -GCGGUGGGUucUCUAGc--CGGC----GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 107788 0.74 0.455402
Target:  5'- aCGCCGCCC-GGAuacUUGGCCGUgGGCg -3'
miRNA:   3'- -GCGGUGGGuUCUcu-AGCCGGCGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 34363 0.73 0.469523
Target:  5'- aCGCCACCCuccgccgcUCGGCUGCCGGg -3'
miRNA:   3'- -GCGGUGGGuucucu--AGCCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 135602 0.73 0.473088
Target:  5'- gCGCCG-CUggGAGA-CGGCCGUCAcGCg -3'
miRNA:   3'- -GCGGUgGGuuCUCUaGCCGGCGGU-CG- -5'
16046 5' -59.3 NC_004065.1 + 88601 0.73 0.482059
Target:  5'- uCGCgGCCCuccauGAGcUCggcgauGGCCGCCAGCu -3'
miRNA:   3'- -GCGgUGGGuu---CUCuAG------CCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 120421 0.73 0.485671
Target:  5'- cCGCgGCCCGGG-GGUCGagcgcggccugauacGCCGCCAGg -3'
miRNA:   3'- -GCGgUGGGUUCuCUAGC---------------CGGCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.