miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 28834 0.73 0.499326
Target:  5'- gCGCCGCCCGAGccGGGaCGcGCCGCUuggugucGGCg -3'
miRNA:   3'- -GCGGUGGGUUC--UCUaGC-CGGCGG-------UCG- -5'
16046 5' -59.3 NC_004065.1 + 4612 0.73 0.500243
Target:  5'- uCGCCACgacccuUCGAGAGGgagCGGCaccaucagCGCCAGCg -3'
miRNA:   3'- -GCGGUG------GGUUCUCUa--GCCG--------GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 114162 0.73 0.509448
Target:  5'- aCGCUuCCCGGGAcucuGAggagCGcGCCGCCGGCc -3'
miRNA:   3'- -GCGGuGGGUUCU----CUa---GC-CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 205895 0.73 0.509448
Target:  5'- uCGUCGCCCuugacGGAUgGGCCGCCgaGGCc -3'
miRNA:   3'- -GCGGUGGGuuc--UCUAgCCGGCGG--UCG- -5'
16046 5' -59.3 NC_004065.1 + 113553 0.72 0.536526
Target:  5'- aGCuCGCCCGccuuucuGGGGAUCgucgagaaGGCCGCgGGCa -3'
miRNA:   3'- gCG-GUGGGU-------UCUCUAG--------CCGGCGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 45169 0.72 0.546929
Target:  5'- cCGCCGCCCGcucGAcucGAucccUCGGCCGaacCCAGCa -3'
miRNA:   3'- -GCGGUGGGUu--CU---CU----AGCCGGC---GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 155870 0.72 0.546929
Target:  5'- aCGCCGCCUgcGGGGuucUCGGCC-CgGGCa -3'
miRNA:   3'- -GCGGUGGGuuCUCU---AGCCGGcGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 34092 0.71 0.574642
Target:  5'- aGCUggaCCAGGuGAUCGGCgauaaagCGCCGGCa -3'
miRNA:   3'- gCGGug-GGUUCuCUAGCCG-------GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 21998 0.71 0.575604
Target:  5'- gGCCACgCCGAc-GGUCaucGCCGCCGGCa -3'
miRNA:   3'- gCGGUG-GGUUcuCUAGc--CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 199900 0.71 0.576566
Target:  5'- cCGCCACCCGcccuccccaGGCCGCCGGg -3'
miRNA:   3'- -GCGGUGGGUucucuag--CCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 125395 0.71 0.585242
Target:  5'- gCGCCugcuucGCCCGcaggucguGGAaGUCGGCCggcGCCAGCg -3'
miRNA:   3'- -GCGG------UGGGU--------UCUcUAGCCGG---CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 130851 0.71 0.585242
Target:  5'- uCGCCAUCgAgcgcgaacuGGAGAccagccUCGGgCGCCGGCg -3'
miRNA:   3'- -GCGGUGGgU---------UCUCU------AGCCgGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 128618 0.71 0.594911
Target:  5'- cCGCC-CCCAcggucguuggcGGAGGUCaggggaccGCCGUCAGCa -3'
miRNA:   3'- -GCGGuGGGU-----------UCUCUAGc-------CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 37184 0.71 0.594911
Target:  5'- cCGCCGCCgucacCGAGAG--CGGCUGCCucaAGCg -3'
miRNA:   3'- -GCGGUGG-----GUUCUCuaGCCGGCGG---UCG- -5'
16046 5' -59.3 NC_004065.1 + 25482 0.71 0.604605
Target:  5'- gCGCCGCUCuauuuuucuauAGAGAUagaGGUCGCCGGa -3'
miRNA:   3'- -GCGGUGGGu----------UCUCUAg--CCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 163291 0.71 0.614316
Target:  5'- aCGCCGCCgGGGuccGAcggcaCGGgCGCCAGCc -3'
miRNA:   3'- -GCGGUGGgUUCu--CUa----GCCgGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 75639 0.71 0.618205
Target:  5'- aGCCGCCgGggaggagguggaaguGGAGGUcggcgaggCGGCCGCgGGCu -3'
miRNA:   3'- gCGGUGGgU---------------UCUCUA--------GCCGGCGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 148837 0.7 0.63377
Target:  5'- uCGCuCGgCCAcGAGG-CGGCCGCC-GCg -3'
miRNA:   3'- -GCG-GUgGGUuCUCUaGCCGGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 194120 0.7 0.63377
Target:  5'- uCGCCAUgCGGGAGGUUucGCCauuuGCCAGCu -3'
miRNA:   3'- -GCGGUGgGUUCUCUAGc-CGG----CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 98839 0.7 0.63377
Target:  5'- gCGCCGCCgauguCAGGGGGUCGGUCauauCCAGa -3'
miRNA:   3'- -GCGGUGG-----GUUCUCUAGCCGGc---GGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.