miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 197506 0.66 0.864402
Target:  5'- gGCUAggucUCCGAGGGAccCGGCCGCgcgCGGUa -3'
miRNA:   3'- gCGGU----GGGUUCUCUa-GCCGGCG---GUCG- -5'
16046 5' -59.3 NC_004065.1 + 198947 0.66 0.864402
Target:  5'- uCGCCGCCCG------UGGCCaCCAGCc -3'
miRNA:   3'- -GCGGUGGGUucucuaGCCGGcGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 102796 0.66 0.864402
Target:  5'- cCGCCaccgcGCCCGAuccucgCGGCCGCC-GCu -3'
miRNA:   3'- -GCGG-----UGGGUUcucua-GCCGGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 135180 0.66 0.864402
Target:  5'- gGaCUGCCCGAGGGAcugUUGGgCGCCGccGCc -3'
miRNA:   3'- gC-GGUGGGUUCUCU---AGCCgGCGGU--CG- -5'
16046 5' -59.3 NC_004065.1 + 81170 0.66 0.864402
Target:  5'- cCGCCGCCUccucGAUcgcggCGGCCGCCucguGGCc -3'
miRNA:   3'- -GCGGUGGGuucuCUA-----GCCGGCGG----UCG- -5'
16046 5' -59.3 NC_004065.1 + 159678 0.66 0.864402
Target:  5'- aGCUACCCGAGGcGcUCcucGCCGCCGucGCc -3'
miRNA:   3'- gCGGUGGGUUCU-CuAGc--CGGCGGU--CG- -5'
16046 5' -59.3 NC_004065.1 + 196679 0.66 0.857142
Target:  5'- aCGCCACCCAGcAGuuucAUCGGCUGguacuugaauCCGGg -3'
miRNA:   3'- -GCGGUGGGUUcUC----UAGCCGGC----------GGUCg -5'
16046 5' -59.3 NC_004065.1 + 101428 0.66 0.857142
Target:  5'- gGUCGgagAAGAGGUC-GCCGCCGGCg -3'
miRNA:   3'- gCGGUgggUUCUCUAGcCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 120173 0.66 0.857142
Target:  5'- uGCCACCUggGuGAggGGagcgaCGCCGcGCu -3'
miRNA:   3'- gCGGUGGGuuCuCUagCCg----GCGGU-CG- -5'
16046 5' -59.3 NC_004065.1 + 53458 0.66 0.857142
Target:  5'- gGUCguGCCCGAGAGGUUcaaGaCCGCCgAGCu -3'
miRNA:   3'- gCGG--UGGGUUCUCUAGc--C-GGCGG-UCG- -5'
16046 5' -59.3 NC_004065.1 + 47588 0.66 0.857142
Target:  5'- aCGUCA-CCAGGAccccCGGCUGcCCAGCg -3'
miRNA:   3'- -GCGGUgGGUUCUcua-GCCGGC-GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 109718 0.66 0.857142
Target:  5'- aCGagGCCCuAGAGAUCGuGCCGaCGGg -3'
miRNA:   3'- -GCggUGGGuUCUCUAGC-CGGCgGUCg -5'
16046 5' -59.3 NC_004065.1 + 75592 0.66 0.849698
Target:  5'- uCGCCGgCgGGGGGA--GGCCGCUGGg -3'
miRNA:   3'- -GCGGUgGgUUCUCUagCCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 110830 0.66 0.849698
Target:  5'- uGCCAggcaCCAgugcGGGGcgCgGGCCGCCcGCg -3'
miRNA:   3'- gCGGUg---GGU----UCUCuaG-CCGGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 186062 0.66 0.842076
Target:  5'- aGCuCACCCcguGGAUCGcGCgGuCCAGCu -3'
miRNA:   3'- gCG-GUGGGuucUCUAGC-CGgC-GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 110403 0.66 0.842076
Target:  5'- aCGCCACggCCGAcGGcGUCuccuccGCCGCCGGCg -3'
miRNA:   3'- -GCGGUG--GGUUcUC-UAGc-----CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 142924 0.66 0.842076
Target:  5'- aCGCCGgCCGucGAGuucCGGCaccaggGCCAGCu -3'
miRNA:   3'- -GCGGUgGGUu-CUCua-GCCGg-----CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 41044 0.66 0.842076
Target:  5'- aGCCGC---AGAGcUCgGGCCGCgCGGCg -3'
miRNA:   3'- gCGGUGgguUCUCuAG-CCGGCG-GUCG- -5'
16046 5' -59.3 NC_004065.1 + 153629 0.66 0.842076
Target:  5'- gCGCCACUCGGacggcggcGAGcucauccgCGGCggCGCCGGCg -3'
miRNA:   3'- -GCGGUGGGUU--------CUCua------GCCG--GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 116295 0.66 0.842076
Target:  5'- uCGCCGgaguucUCCGAGGuGUCGGC-GUCGGCg -3'
miRNA:   3'- -GCGGU------GGGUUCUcUAGCCGgCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.