miRNA display CGI


Results 41 - 60 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 86145 0.66 0.841304
Target:  5'- cCGCgCACCUGAcGAGAUccucuuugacgugCGGCaggauGCCGGCg -3'
miRNA:   3'- -GCG-GUGGGUU-CUCUA-------------GCCGg----CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 120521 0.66 0.841304
Target:  5'- gCGCCGCUCGAcgaugucGAGGgucucCGGUgUGCCGGCg -3'
miRNA:   3'- -GCGGUGGGUU-------CUCUa----GCCG-GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 78545 0.66 0.841304
Target:  5'- gGCCAguaggUCGAGAGAUCGcgccacuGCUGCUGGCa -3'
miRNA:   3'- gCGGUg----GGUUCUCUAGC-------CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 119854 0.66 0.839756
Target:  5'- gGCCGCCgcAGAGGUCGGggaagacguCCcugagcgagaacuuGCCGGCg -3'
miRNA:   3'- gCGGUGGguUCUCUAGCC---------GG--------------CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 189911 0.67 0.836638
Target:  5'- uCGCCACCaccaauauagCGGCCGCCAa- -3'
miRNA:   3'- -GCGGUGGguucucua--GCCGGCGGUcg -5'
16046 5' -59.3 NC_004065.1 + 191145 0.67 0.834282
Target:  5'- uGCUgaaACCCAgaucgaacGGGucGAUCuuGGCCGUCAGCg -3'
miRNA:   3'- gCGG---UGGGU--------UCU--CUAG--CCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 128432 0.67 0.834282
Target:  5'- cCGCCACCgAGucuGAGcgCGGCggaggcgucCGCgGGCg -3'
miRNA:   3'- -GCGGUGGgUU---CUCuaGCCG---------GCGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 78619 0.67 0.834282
Target:  5'- gCGCCGCCUGAGGuGAacgCGGUCGgCgagGGCg -3'
miRNA:   3'- -GCGGUGGGUUCU-CUa--GCCGGCgG---UCG- -5'
16046 5' -59.3 NC_004065.1 + 205512 0.67 0.834282
Target:  5'- cCGCCGCCaucuuGGGGcCGGCgcucaggGCCGGCg -3'
miRNA:   3'- -GCGGUGGguu--CUCUaGCCGg------CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 78492 0.67 0.834282
Target:  5'- aGCgCGCCCGAcaccgccCGGCCGgCAGCg -3'
miRNA:   3'- gCG-GUGGGUUcucua--GCCGGCgGUCG- -5'
16046 5' -59.3 NC_004065.1 + 128574 0.67 0.834282
Target:  5'- gGUCAUgaCgAGGAGAaCGGguCCGCCGGCg -3'
miRNA:   3'- gCGGUG--GgUUCUCUaGCC--GGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 37798 0.67 0.834282
Target:  5'- gCGCCAgCCAGuacaacGAGGUgGuGCCGUCGGa -3'
miRNA:   3'- -GCGGUgGGUU------CUCUAgC-CGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 70684 0.67 0.833493
Target:  5'- gGCUGCCCGAGGGccUGGacguggacaccaaCCGCCuGCg -3'
miRNA:   3'- gCGGUGGGUUCUCuaGCC-------------GGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 32525 0.67 0.833493
Target:  5'- aCGgCGCCCAuccuGAuGA-CGGCCccgucgcGCCGGCg -3'
miRNA:   3'- -GCgGUGGGUu---CU-CUaGCCGG-------CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 142803 0.67 0.826321
Target:  5'- gGCCAUCUucGAGAUCaaauGCCGCUucaAGUa -3'
miRNA:   3'- gCGGUGGGuuCUCUAGc---CGGCGG---UCG- -5'
16046 5' -59.3 NC_004065.1 + 139835 0.67 0.826321
Target:  5'- gGCCuggaguCCCGGGAGG-CGGgCGaCGGCg -3'
miRNA:   3'- gCGGu-----GGGUUCUCUaGCCgGCgGUCG- -5'
16046 5' -59.3 NC_004065.1 + 150772 0.67 0.826321
Target:  5'- aGCCGC---AGAcAUCGcGCCGUCAGCg -3'
miRNA:   3'- gCGGUGgguUCUcUAGC-CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 221520 0.67 0.826321
Target:  5'- aGCCACCCGacAGuGAaCGGCCGgguGCc -3'
miRNA:   3'- gCGGUGGGU--UCuCUaGCCGGCgguCG- -5'
16046 5' -59.3 NC_004065.1 + 68013 0.67 0.826321
Target:  5'- aGCCGuucuaCCGgcaguacuucguGGAcGUgGGCCGCCAGCu -3'
miRNA:   3'- gCGGUg----GGU------------UCUcUAgCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 223511 0.67 0.826321
Target:  5'- uCGCCGgUCAGGGGAUCuagUGCCGGCc -3'
miRNA:   3'- -GCGGUgGGUUCUCUAGccgGCGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.