miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 496 0.68 0.775451
Target:  5'- gCGCCGCguCCGcGGGAaggCGGggugaggcgccCCGCCAGCg -3'
miRNA:   3'- -GCGGUG--GGUuCUCUa--GCC-----------GGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 4612 0.73 0.500243
Target:  5'- uCGCCACgacccuUCGAGAGGgagCGGCaccaucagCGCCAGCg -3'
miRNA:   3'- -GCGGUG------GGUUCUCUa--GCCG--------GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 14707 0.74 0.446694
Target:  5'- cCGCCACCCAucAGAUCcacGCCGucacCCAGCa -3'
miRNA:   3'- -GCGGUGGGUucUCUAGc--CGGC----GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 21998 0.71 0.575604
Target:  5'- gGCCACgCCGAc-GGUCaucGCCGCCGGCa -3'
miRNA:   3'- gCGGUG-GGUUcuCUAGc--CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 24515 0.67 0.801509
Target:  5'- gCGCCGgcCCCAAGAuGG-CGGCgG-CAGCg -3'
miRNA:   3'- -GCGGU--GGGUUCU-CUaGCCGgCgGUCG- -5'
16046 5' -59.3 NC_004065.1 + 25482 0.71 0.604605
Target:  5'- gCGCCGCUCuauuuuucuauAGAGAUagaGGUCGCCGGa -3'
miRNA:   3'- -GCGGUGGGu----------UCUCUAg--CCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 25486 0.68 0.781632
Target:  5'- cCGCCGCCCGAcGAGGcgUCuGGCgaccacgacggucuCGCCGuGCg -3'
miRNA:   3'- -GCGGUGGGUU-CUCU--AG-CCG--------------GCGGU-CG- -5'
16046 5' -59.3 NC_004065.1 + 28468 0.67 0.792951
Target:  5'- gGCUACUCGcucGAG-UCGGCCGCgAGa -3'
miRNA:   3'- gCGGUGGGUu--CUCuAGCCGGCGgUCg -5'
16046 5' -59.3 NC_004065.1 + 28834 0.73 0.499326
Target:  5'- gCGCCGCCCGAGccGGGaCGcGCCGCUuggugucGGCg -3'
miRNA:   3'- -GCGGUGGGUUC--UCUaGC-CGGCGG-------UCG- -5'
16046 5' -59.3 NC_004065.1 + 29117 0.68 0.775451
Target:  5'- gGaCACUUggGAGGcCGGUCGcCCAGCg -3'
miRNA:   3'- gCgGUGGGuuCUCUaGCCGGC-GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 29723 0.69 0.68226
Target:  5'- aCGCCGCCCAGGAcgaugaGAUCcuCCGgaCAGCa -3'
miRNA:   3'- -GCGGUGGGUUCU------CUAGccGGCg-GUCG- -5'
16046 5' -59.3 NC_004065.1 + 30526 0.7 0.653219
Target:  5'- gGCCGCCgCGugggaAGAGAcguacgugaucuUCGGCUGCC-GCa -3'
miRNA:   3'- gCGGUGG-GU-----UCUCU------------AGCCGGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 31884 0.68 0.766523
Target:  5'- uCGCCACCCAuGGcGG-CGGCgaUGaCCAGCu -3'
miRNA:   3'- -GCGGUGGGUuCU-CUaGCCG--GC-GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 32459 0.74 0.420305
Target:  5'- aGCCGCaugcccaCCAGGucGUCGGCgCGCCAGUg -3'
miRNA:   3'- gCGGUG-------GGUUCucUAGCCG-GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 32525 0.67 0.833493
Target:  5'- aCGgCGCCCAuccuGAuGA-CGGCCccgucgcGCCGGCg -3'
miRNA:   3'- -GCgGUGGGUu---CU-CUaGCCGG-------CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 34092 0.71 0.574642
Target:  5'- aGCUggaCCAGGuGAUCGGCgauaaagCGCCGGCa -3'
miRNA:   3'- gCGGug-GGUUCuCUAGCCG-------GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 34363 0.73 0.469523
Target:  5'- aCGCCACCCuccgccgcUCGGCUGCCGGg -3'
miRNA:   3'- -GCGGUGGGuucucu--AGCCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 35147 0.66 0.877671
Target:  5'- uGCCgaaGCCCAAGAcccuggucaggaaGAUCGuGuCCGCC-GCc -3'
miRNA:   3'- gCGG---UGGGUUCU-------------CUAGC-C-GGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 35632 0.66 0.877671
Target:  5'- cCGCCGcucugucCCCAcAGGGAcgaagacCGGCCGCCGaucGCc -3'
miRNA:   3'- -GCGGU-------GGGU-UCUCUa------GCCGGCGGU---CG- -5'
16046 5' -59.3 NC_004065.1 + 37184 0.71 0.594911
Target:  5'- cCGCCGCCgucacCGAGAG--CGGCUGCCucaAGCg -3'
miRNA:   3'- -GCGGUGG-----GUUCUCuaGCCGGCGG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.