miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 37272 0.7 0.662924
Target:  5'- aCGaCCACCCcAGAGAagagcgccaguuUCGGCgGCCucaagAGCc -3'
miRNA:   3'- -GC-GGUGGGuUCUCU------------AGCCGgCGG-----UCG- -5'
16046 5' -59.3 NC_004065.1 + 37798 0.67 0.834282
Target:  5'- gCGCCAgCCAGuacaacGAGGUgGuGCCGUCGGa -3'
miRNA:   3'- -GCGGUgGGUU------CUCUAgC-CGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 41044 0.66 0.842076
Target:  5'- aGCCGC---AGAGcUCgGGCCGCgCGGCg -3'
miRNA:   3'- gCGGUGgguUCUCuAG-CCGGCG-GUCG- -5'
16046 5' -59.3 NC_004065.1 + 45169 0.72 0.546929
Target:  5'- cCGCCGCCCGcucGAcucGAucccUCGGCCGaacCCAGCa -3'
miRNA:   3'- -GCGGUGGGUu--CU---CU----AGCCGGC---GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 45531 0.67 0.792951
Target:  5'- aCGCCACCCGGcgccgCGGCgGCggCGGCa -3'
miRNA:   3'- -GCGGUGGGUUcucuaGCCGgCG--GUCG- -5'
16046 5' -59.3 NC_004065.1 + 47588 0.66 0.857142
Target:  5'- aCGUCA-CCAGGAccccCGGCUGcCCAGCg -3'
miRNA:   3'- -GCGGUgGGUUCUcua-GCCGGC-GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 52640 0.68 0.784263
Target:  5'- uCGCCACCgAcGAacaccUUGGCCGCCgcuGGCg -3'
miRNA:   3'- -GCGGUGGgUuCUcu---AGCCGGCGG---UCG- -5'
16046 5' -59.3 NC_004065.1 + 53458 0.66 0.857142
Target:  5'- gGUCguGCCCGAGAGGUUcaaGaCCGCCgAGCu -3'
miRNA:   3'- gCGG--UGGGUUCUCUAGc--C-GGCGG-UCG- -5'
16046 5' -59.3 NC_004065.1 + 60549 0.69 0.691876
Target:  5'- aGCCGCCgGAGAcGA-CGGagaCGCCGGg -3'
miRNA:   3'- gCGGUGGgUUCU-CUaGCCg--GCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 63062 0.7 0.643498
Target:  5'- gCGCaguCgCAGGAGucgcCGGUCGCCGGCg -3'
miRNA:   3'- -GCGgu-GgGUUCUCua--GCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 66708 0.69 0.714755
Target:  5'- cCGCCACCagaguCAAGAGGcuggcgcccgugccgUCGGaCC-CCGGCg -3'
miRNA:   3'- -GCGGUGG-----GUUCUCU---------------AGCC-GGcGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 68013 0.67 0.826321
Target:  5'- aGCCGuucuaCCGgcaguacuucguGGAcGUgGGCCGCCAGCu -3'
miRNA:   3'- gCGGUg----GGU------------UCUcUAgCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 68034 0.69 0.710964
Target:  5'- gGUCGCUaCGAGGGGUCGGUCGa-AGCg -3'
miRNA:   3'- gCGGUGG-GUUCUCUAGCCGGCggUCG- -5'
16046 5' -59.3 NC_004065.1 + 70684 0.67 0.833493
Target:  5'- gGCUGCCCGAGGGccUGGacguggacaccaaCCGCCuGCg -3'
miRNA:   3'- gCGGUGGGUUCUCuaGCC-------------GGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 72086 0.69 0.691876
Target:  5'- aCGCCACCCu---GcgCGGCCugaucGCCAGa -3'
miRNA:   3'- -GCGGUGGGuucuCuaGCCGG-----CGGUCg -5'
16046 5' -59.3 NC_004065.1 + 74641 0.69 0.68226
Target:  5'- cCGCUACCCGGgucuGAGGUcCGGaCCG-CGGCg -3'
miRNA:   3'- -GCGGUGGGUU----CUCUA-GCC-GGCgGUCG- -5'
16046 5' -59.3 NC_004065.1 + 75592 0.66 0.849698
Target:  5'- uCGCCGgCgGGGGGA--GGCCGCUGGg -3'
miRNA:   3'- -GCGGUgGgUUCUCUagCCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 75639 0.71 0.618205
Target:  5'- aGCCGCCgGggaggagguggaaguGGAGGUcggcgaggCGGCCGCgGGCu -3'
miRNA:   3'- gCGGUGGgU---------------UCUCUA--------GCCGGCGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 75762 0.75 0.404604
Target:  5'- gCGCUgACCCGGGGGAggcggaggCGGCgGUCGGCg -3'
miRNA:   3'- -GCGG-UGGGUUCUCUa-------GCCGgCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 76418 0.67 0.801509
Target:  5'- gCGCCGCCCGAGccgacccgaucAG-UCGGUCGUUucccuGCg -3'
miRNA:   3'- -GCGGUGGGUUC-----------UCuAGCCGGCGGu----CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.