miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 229443 0.75 0.396491
Target:  5'- uGCCACCaCGGGguGGcgCuGCCGCCAGCc -3'
miRNA:   3'- gCGGUGG-GUUC--UCuaGcCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 228209 0.67 0.801509
Target:  5'- cCGUCACCaCGGGAaccgcGAUC-GCCGCC-GCg -3'
miRNA:   3'- -GCGGUGG-GUUCU-----CUAGcCGGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 227050 0.67 0.808255
Target:  5'- gCGCCAgagaggucgcuuuCCCAGGAGGUCuuGGCUcucgagaGCCgAGCc -3'
miRNA:   3'- -GCGGU-------------GGGUUCUCUAG--CCGG-------CGG-UCG- -5'
16046 5' -59.3 NC_004065.1 + 225330 0.68 0.748351
Target:  5'- gCGCCAUCCc--GGAUCGuuaguguccGCCGCCGGa -3'
miRNA:   3'- -GCGGUGGGuucUCUAGC---------CGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 224787 0.69 0.72981
Target:  5'- gCGCCACCUGAGcGggCGGCaGCaCGGUc -3'
miRNA:   3'- -GCGGUGGGUUCuCuaGCCGgCG-GUCG- -5'
16046 5' -59.3 NC_004065.1 + 223928 0.67 0.801509
Target:  5'- gGCaGCCCAGGAGGagacCGGgucUCGUCAGCg -3'
miRNA:   3'- gCGgUGGGUUCUCUa---GCC---GGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 223511 0.67 0.826321
Target:  5'- uCGCCGgUCAGGGGAUCuagUGCCGGCc -3'
miRNA:   3'- -GCGGUgGGUUCUCUAGccgGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 221520 0.67 0.826321
Target:  5'- aGCCACCCGacAGuGAaCGGCCGgguGCc -3'
miRNA:   3'- gCGGUGGGU--UCuCUaGCCGGCgguCG- -5'
16046 5' -59.3 NC_004065.1 + 217172 0.68 0.774563
Target:  5'- aGCCGCagaaacgaCCucGAGAUCGcagugcagcgaaaGCCGCCGGUc -3'
miRNA:   3'- gCGGUG--------GGuuCUCUAGC-------------CGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 213413 0.77 0.287953
Target:  5'- uGCCGCCgAAGAGAUCGcGuCCG-CAGCg -3'
miRNA:   3'- gCGGUGGgUUCUCUAGC-C-GGCgGUCG- -5'
16046 5' -59.3 NC_004065.1 + 213224 0.66 0.871473
Target:  5'- gGCgGCCguGGAcGAugguUCGGUCGUCGGUa -3'
miRNA:   3'- gCGgUGGguUCU-CU----AGCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 212046 0.68 0.757487
Target:  5'- cCGaCACCCAAGAGGUCGcGCgG-CAGa -3'
miRNA:   3'- -GCgGUGGGUUCUCUAGC-CGgCgGUCg -5'
16046 5' -59.3 NC_004065.1 + 207995 0.68 0.748351
Target:  5'- gGCCugCCcGGGGccgUGGCCggguuaguGCCGGCg -3'
miRNA:   3'- gCGGugGGuUCUCua-GCCGG--------CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 205895 0.73 0.509448
Target:  5'- uCGUCGCCCuugacGGAUgGGCCGCCgaGGCc -3'
miRNA:   3'- -GCGGUGGGuuc--UCUAgCCGGCGG--UCG- -5'
16046 5' -59.3 NC_004065.1 + 205512 0.67 0.834282
Target:  5'- cCGCCGCCaucuuGGGGcCGGCgcucaggGCCGGCg -3'
miRNA:   3'- -GCGGUGGguu--CUCUaGCCGg------CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 204424 0.68 0.748351
Target:  5'- gGCC-CCaucGAGAUCGGCCugcuGCuCAGCc -3'
miRNA:   3'- gCGGuGGguuCUCUAGCCGG----CG-GUCG- -5'
16046 5' -59.3 NC_004065.1 + 199900 0.71 0.576566
Target:  5'- cCGCCACCCGcccuccccaGGCCGCCGGg -3'
miRNA:   3'- -GCGGUGGGUucucuag--CCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 198947 0.66 0.864402
Target:  5'- uCGCCGCCCG------UGGCCaCCAGCc -3'
miRNA:   3'- -GCGGUGGGUucucuaGCCGGcGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 198011 0.69 0.72981
Target:  5'- gCGCgaugGCCUcGGAGGcggucgCGGUCGCCGGCg -3'
miRNA:   3'- -GCGg---UGGGuUCUCUa-----GCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 197506 0.66 0.864402
Target:  5'- gGCUAggucUCCGAGGGAccCGGCCGCgcgCGGUa -3'
miRNA:   3'- gCGGU----GGGUUCUCUa-GCCGGCG---GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.