Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16046 | 5' | -59.3 | NC_004065.1 | + | 130851 | 0.71 | 0.585242 |
Target: 5'- uCGCCAUCgAgcgcgaacuGGAGAccagccUCGGgCGCCGGCg -3' miRNA: 3'- -GCGGUGGgU---------UCUCU------AGCCgGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 34363 | 0.73 | 0.469523 |
Target: 5'- aCGCCACCCuccgccgcUCGGCUGCCGGg -3' miRNA: 3'- -GCGGUGGGuucucu--AGCCGGCGGUCg -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 135602 | 0.73 | 0.473088 |
Target: 5'- gCGCCG-CUggGAGA-CGGCCGUCAcGCg -3' miRNA: 3'- -GCGGUgGGuuCUCUaGCCGGCGGU-CG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 88601 | 0.73 | 0.482059 |
Target: 5'- uCGCgGCCCuccauGAGcUCggcgauGGCCGCCAGCu -3' miRNA: 3'- -GCGgUGGGuu---CUCuAG------CCGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 114162 | 0.73 | 0.509448 |
Target: 5'- aCGCUuCCCGGGAcucuGAggagCGcGCCGCCGGCc -3' miRNA: 3'- -GCGGuGGGUUCU----CUa---GC-CGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 113553 | 0.72 | 0.536526 |
Target: 5'- aGCuCGCCCGccuuucuGGGGAUCgucgagaaGGCCGCgGGCa -3' miRNA: 3'- gCG-GUGGGU-------UCUCUAG--------CCGGCGgUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 34092 | 0.71 | 0.574642 |
Target: 5'- aGCUggaCCAGGuGAUCGGCgauaaagCGCCGGCa -3' miRNA: 3'- gCGGug-GGUUCuCUAGCCG-------GCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 21998 | 0.71 | 0.575604 |
Target: 5'- gGCCACgCCGAc-GGUCaucGCCGCCGGCa -3' miRNA: 3'- gCGGUG-GGUUcuCUAGc--CGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 125395 | 0.71 | 0.585242 |
Target: 5'- gCGCCugcuucGCCCGcaggucguGGAaGUCGGCCggcGCCAGCg -3' miRNA: 3'- -GCGG------UGGGU--------UCUcUAGCCGG---CGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 107788 | 0.74 | 0.455402 |
Target: 5'- aCGCCGCCC-GGAuacUUGGCCGUgGGCg -3' miRNA: 3'- -GCGGUGGGuUCUcu-AGCCGGCGgUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 14707 | 0.74 | 0.446694 |
Target: 5'- cCGCCACCCAucAGAUCcacGCCGucacCCAGCa -3' miRNA: 3'- -GCGGUGGGUucUCUAGc--CGGC----GGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 189859 | 0.74 | 0.43808 |
Target: 5'- uCGUCGCCgCGAGGGGUUugcuGCCGUCGGCa -3' miRNA: 3'- -GCGGUGG-GUUCUCUAGc---CGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 136471 | 0.82 | 0.145903 |
Target: 5'- uGCCGCCUAAGAGcAUCGGCgGCUccGGCg -3' miRNA: 3'- gCGGUGGGUUCUC-UAGCCGgCGG--UCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 213413 | 0.77 | 0.287953 |
Target: 5'- uGCCGCCgAAGAGAUCGcGuCCG-CAGCg -3' miRNA: 3'- gCGGUGGgUUCUCUAGC-C-GGCgGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 90229 | 0.76 | 0.321336 |
Target: 5'- aGUUuCCCAAGAGGUCGGC-GUCGGCg -3' miRNA: 3'- gCGGuGGGUUCUCUAGCCGgCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 89711 | 0.75 | 0.372789 |
Target: 5'- gCGCCACCCAcuuGGAGAUCuGcGCCGUCGu- -3' miRNA: 3'- -GCGGUGGGU---UCUCUAG-C-CGGCGGUcg -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 110204 | 0.75 | 0.388483 |
Target: 5'- cCGCCGCCCGucgAGAGGgaagagGGCuuCGCCGGCg -3' miRNA: 3'- -GCGGUGGGU---UCUCUag----CCG--GCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 229443 | 0.75 | 0.396491 |
Target: 5'- uGCCACCaCGGGguGGcgCuGCCGCCAGCc -3' miRNA: 3'- gCGGUGG-GUUC--UCuaGcCGGCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 75762 | 0.75 | 0.404604 |
Target: 5'- gCGCUgACCCGGGGGAggcggaggCGGCgGUCGGCg -3' miRNA: 3'- -GCGG-UGGGUUCUCUa-------GCCGgCGGUCG- -5' |
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16046 | 5' | -59.3 | NC_004065.1 | + | 32459 | 0.74 | 0.420305 |
Target: 5'- aGCCGCaugcccaCCAGGucGUCGGCgCGCCAGUg -3' miRNA: 3'- gCGGUG-------GGUUCucUAGCCG-GCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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