miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16046 5' -59.3 NC_004065.1 + 116248 0.78 0.245885
Target:  5'- aGCCGCCCGAGucGGUCGucuGCCGCCgcGGCu -3'
miRNA:   3'- gCGGUGGGUUCu-CUAGC---CGGCGG--UCG- -5'
16046 5' -59.3 NC_004065.1 + 102033 0.7 0.653219
Target:  5'- gGCCACCUcGGuGAcccgCGGCgGCCGGg -3'
miRNA:   3'- gCGGUGGGuUCuCUa---GCCGgCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 87587 0.7 0.653219
Target:  5'- uCGCCuucaugACCCugAGGAGc-CGGCgCGCCGGCa -3'
miRNA:   3'- -GCGG------UGGG--UUCUCuaGCCG-GCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 159142 0.66 0.878349
Target:  5'- uCGCCugC-GAGuuGUCcagcagGGUCGCCAGCu -3'
miRNA:   3'- -GCGGugGgUUCucUAG------CCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 120421 0.73 0.485671
Target:  5'- cCGCgGCCCGGG-GGUCGagcgcggccugauacGCCGCCAGg -3'
miRNA:   3'- -GCGgUGGGUUCuCUAGC---------------CGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 28834 0.73 0.499326
Target:  5'- gCGCCGCCCGAGccGGGaCGcGCCGCUuggugucGGCg -3'
miRNA:   3'- -GCGGUGGGUUC--UCUaGC-CGGCGG-------UCG- -5'
16046 5' -59.3 NC_004065.1 + 205895 0.73 0.509448
Target:  5'- uCGUCGCCCuugacGGAUgGGCCGCCgaGGCc -3'
miRNA:   3'- -GCGGUGGGuuc--UCUAgCCGGCGG--UCG- -5'
16046 5' -59.3 NC_004065.1 + 155870 0.72 0.546929
Target:  5'- aCGCCGCCUgcGGGGuucUCGGCC-CgGGCa -3'
miRNA:   3'- -GCGGUGGGuuCUCU---AGCCGGcGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 25482 0.71 0.604605
Target:  5'- gCGCCGCUCuauuuuucuauAGAGAUagaGGUCGCCGGa -3'
miRNA:   3'- -GCGGUGGGu----------UCUCUAg--CCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 112847 0.7 0.643498
Target:  5'- aCGCCuGCCCcAGGGG-CGGaccCCGUCGGCg -3'
miRNA:   3'- -GCGG-UGGGuUCUCUaGCC---GGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 148837 0.7 0.63377
Target:  5'- uCGCuCGgCCAcGAGG-CGGCCGCC-GCg -3'
miRNA:   3'- -GCG-GUgGGUuCUCUaGCCGGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 199900 0.71 0.576566
Target:  5'- cCGCCACCCGcccuccccaGGCCGCCGGg -3'
miRNA:   3'- -GCGGUGGGUucucuag--CCGGCGGUCg -5'
16046 5' -59.3 NC_004065.1 + 109818 0.78 0.275383
Target:  5'- gGuCCGCCCAAGaAGAUCGGCaggGCgAGCg -3'
miRNA:   3'- gC-GGUGGGUUC-UCUAGCCGg--CGgUCG- -5'
16046 5' -59.3 NC_004065.1 + 194120 0.7 0.63377
Target:  5'- uCGCCAUgCGGGAGGUUucGCCauuuGCCAGCu -3'
miRNA:   3'- -GCGGUGgGUUCUCUAGc-CGG----CGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 162144 0.77 0.294405
Target:  5'- aGaCGCUCGGGcaaccuGAUCGGCCGCCGGCu -3'
miRNA:   3'- gCgGUGGGUUCu-----CUAGCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 45169 0.72 0.546929
Target:  5'- cCGCCGCCCGcucGAcucGAucccUCGGCCGaacCCAGCa -3'
miRNA:   3'- -GCGGUGGGUu--CU---CU----AGCCGGC---GGUCG- -5'
16046 5' -59.3 NC_004065.1 + 63062 0.7 0.643498
Target:  5'- gCGCaguCgCAGGAGucgcCGGUCGCCGGCg -3'
miRNA:   3'- -GCGgu-GgGUUCUCua--GCCGGCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 30526 0.7 0.653219
Target:  5'- gGCCGCCgCGugggaAGAGAcguacgugaucuUCGGCUGCC-GCa -3'
miRNA:   3'- gCGGUGG-GU-----UCUCU------------AGCCGGCGGuCG- -5'
16046 5' -59.3 NC_004065.1 + 165867 0.75 0.404604
Target:  5'- gCGUaACuCCGAGAccaGGUCGGCgGCCAGCg -3'
miRNA:   3'- -GCGgUG-GGUUCU---CUAGCCGgCGGUCG- -5'
16046 5' -59.3 NC_004065.1 + 4612 0.73 0.500243
Target:  5'- uCGCCACgacccuUCGAGAGGgagCGGCaccaucagCGCCAGCg -3'
miRNA:   3'- -GCGGUG------GGUUCUCUa--GCCG--------GCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.