miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 3' -55.6 NC_004065.1 + 201017 0.66 0.968511
Target:  5'- ----cGAGGccGCGUgCGCgcggcgccUCGCCACCGCc -3'
miRNA:   3'- uauacCUCC--UGCA-GCG--------AGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 91462 0.66 0.968511
Target:  5'- ---cGGAcGGcacCGUCGCcgucagucCGCCGCCGCu -3'
miRNA:   3'- uauaCCU-CCu--GCAGCGa-------GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 138234 0.66 0.968511
Target:  5'- gAUGUcGAGG----CGCUCGCCGCCGUc -3'
miRNA:   3'- -UAUAcCUCCugcaGCGAGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 34942 0.66 0.968511
Target:  5'- --cUGGGGGucugcgccGCG-CGCUCGCCcgACCuGCa -3'
miRNA:   3'- uauACCUCC--------UGCaGCGAGUGG--UGG-CG- -5'
16047 3' -55.6 NC_004065.1 + 144942 0.66 0.968511
Target:  5'- -aAUGGAGaaguguAUGUCGCUUACCACg-- -3'
miRNA:   3'- uaUACCUCc-----UGCAGCGAGUGGUGgcg -5'
16047 3' -55.6 NC_004065.1 + 130149 0.66 0.968511
Target:  5'- ---aGGaAGGACGagGCcgUCGCUAuCCGCg -3'
miRNA:   3'- uauaCC-UCCUGCagCG--AGUGGU-GGCG- -5'
16047 3' -55.6 NC_004065.1 + 226200 0.66 0.96545
Target:  5'- ---gGGAGGuugaguACcUCGCUCAUCuuCCGCa -3'
miRNA:   3'- uauaCCUCC------UGcAGCGAGUGGu-GGCG- -5'
16047 3' -55.6 NC_004065.1 + 24476 0.66 0.96545
Target:  5'- ---cGGAcauGGGCG-CGUagauggCACCGCCGCc -3'
miRNA:   3'- uauaCCU---CCUGCaGCGa-----GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 124306 0.66 0.96545
Target:  5'- ---aGGAacacgcGGAUGUCGUgguUCGCCgucGCCGCc -3'
miRNA:   3'- uauaCCU------CCUGCAGCG---AGUGG---UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 125901 0.66 0.96545
Target:  5'- ----cGAGGAUc-CGCUCGCCAUgGCg -3'
miRNA:   3'- uauacCUCCUGcaGCGAGUGGUGgCG- -5'
16047 3' -55.6 NC_004065.1 + 29235 0.66 0.96545
Target:  5'- ----cGAGacgcCGUCGCcCGCCACCGCc -3'
miRNA:   3'- uauacCUCcu--GCAGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 228455 0.66 0.96545
Target:  5'- ---cGGAGGuCGcUCGCagGCaCGCCGUc -3'
miRNA:   3'- uauaCCUCCuGC-AGCGagUG-GUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 202065 0.66 0.96545
Target:  5'- -cAUGGcgagguacaGGGACGUgUGCUgCACCAUCGg -3'
miRNA:   3'- uaUACC---------UCCUGCA-GCGA-GUGGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 169317 0.66 0.962187
Target:  5'- -gAUGGAGcguGACGggcgcagCGC-CAUCACCGUc -3'
miRNA:   3'- uaUACCUC---CUGCa------GCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 98875 0.66 0.962187
Target:  5'- ---cGGGGGuCGUCG-UCGcCCACgCGCu -3'
miRNA:   3'- uauaCCUCCuGCAGCgAGU-GGUG-GCG- -5'
16047 3' -55.6 NC_004065.1 + 166931 0.66 0.962187
Target:  5'- -gGUGGugAGGuccaacgccCGUCGCUCGCCGgCGa -3'
miRNA:   3'- uaUACC--UCCu--------GCAGCGAGUGGUgGCg -5'
16047 3' -55.6 NC_004065.1 + 36035 0.66 0.958716
Target:  5'- ---aGGAGGugGUUGuCUCuucUCGCCGa -3'
miRNA:   3'- uauaCCUCCugCAGC-GAGu--GGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 167154 0.66 0.958716
Target:  5'- ---gGGAGGccaGCagacCGC-CACCACCGCu -3'
miRNA:   3'- uauaCCUCC---UGca--GCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 77239 0.66 0.958357
Target:  5'- ---cGGAGGucagucgACGUCGauacuuCUCACCGCCa- -3'
miRNA:   3'- uauaCCUCC-------UGCAGC------GAGUGGUGGcg -5'
16047 3' -55.6 NC_004065.1 + 154175 0.66 0.955032
Target:  5'- ---cGGAGGAUGacuucCGUUC-CCACCGa -3'
miRNA:   3'- uauaCCUCCUGCa----GCGAGuGGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.