miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 3' -55.6 NC_004065.1 + 80269 1.09 0.005062
Target:  5'- cAUAUGGAGGACGUCGCUCACCACCGCc -3'
miRNA:   3'- -UAUACCUCCUGCAGCGAGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 162347 0.78 0.419899
Target:  5'- -gAUGGAGGGCc-CGC-CGCCGCCGCc -3'
miRNA:   3'- uaUACCUCCUGcaGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 141298 0.78 0.419899
Target:  5'- --cUGGuGGACGU-GCUCAuCCGCCGCu -3'
miRNA:   3'- uauACCuCCUGCAgCGAGU-GGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 54638 0.77 0.437283
Target:  5'- -gGUGGGGGAuCGUCGUcCGCCugcuGCCGCa -3'
miRNA:   3'- uaUACCUCCU-GCAGCGaGUGG----UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 197126 0.76 0.527869
Target:  5'- uUGUGGGGGAUGcccagcggcagaCGCUCGCCGgCGCg -3'
miRNA:   3'- uAUACCUCCUGCa-----------GCGAGUGGUgGCG- -5'
16047 3' -55.6 NC_004065.1 + 39705 0.76 0.529796
Target:  5'- ---aGGAGGugGUC-CUCACCguaucuccgaacGCCGCg -3'
miRNA:   3'- uauaCCUCCugCAGcGAGUGG------------UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 57750 0.75 0.558998
Target:  5'- ---gGGAGGAgagagaucguCGUCGC-CGCCGCCGUc -3'
miRNA:   3'- uauaCCUCCU----------GCAGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 111033 0.75 0.558998
Target:  5'- gAUGUGGAGGAagGUCuggCACCGCCGUa -3'
miRNA:   3'- -UAUACCUCCUg-CAGcgaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 50330 0.75 0.568836
Target:  5'- -aGUGGuGGcacGCGUgGC-CACCGCCGCg -3'
miRNA:   3'- uaUACCuCC---UGCAgCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 101849 0.74 0.598581
Target:  5'- ---cGcGGGGGCGUCGggggcgcuaUCGCCGCCGCa -3'
miRNA:   3'- uauaC-CUCCUGCAGCg--------AGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 199434 0.74 0.618539
Target:  5'- ---cGGAacgcGGACGaggCGCUCGCCGCgGCg -3'
miRNA:   3'- uauaCCU----CCUGCa--GCGAGUGGUGgCG- -5'
16047 3' -55.6 NC_004065.1 + 6115 0.73 0.678412
Target:  5'- -gAUGGAGGAaccaucaCGC-CGCCGCCGCc -3'
miRNA:   3'- uaUACCUCCUgca----GCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 212996 0.73 0.68831
Target:  5'- gGUggGGGGGACGUgUGCUCAgUGCUGCc -3'
miRNA:   3'- -UAuaCCUCCUGCA-GCGAGUgGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 192494 0.73 0.68831
Target:  5'- -gAUGGAGGGCuGUUGCacgCugagguCCACCGCu -3'
miRNA:   3'- uaUACCUCCUG-CAGCGa--Gu-----GGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 138455 0.72 0.707964
Target:  5'- ---aGGGGGGCGUC-CUCACCAaaGUc -3'
miRNA:   3'- uauaCCUCCUGCAGcGAGUGGUggCG- -5'
16047 3' -55.6 NC_004065.1 + 130517 0.72 0.727374
Target:  5'- ---cGGAGGugGUguUGCacaUCACCgACCGCg -3'
miRNA:   3'- uauaCCUCCugCA--GCG---AGUGG-UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 159727 0.72 0.736965
Target:  5'- cGUGUGGGGGGUGcUGCUgaagGCCGCCGCg -3'
miRNA:   3'- -UAUACCUCCUGCaGCGAg---UGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 14186 0.72 0.736965
Target:  5'- -gAUGGaAGGGCGUCGUgaCGCCuCCGUc -3'
miRNA:   3'- uaUACC-UCCUGCAGCGa-GUGGuGGCG- -5'
16047 3' -55.6 NC_004065.1 + 55425 0.72 0.740777
Target:  5'- -cGUGGuGGugG-CGUgcuuccuagcgggggUCGCCGCCGCg -3'
miRNA:   3'- uaUACCuCCugCaGCG---------------AGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 22808 0.72 0.746469
Target:  5'- cUGUGGGGGugGUUGgaCAUUuCCGCu -3'
miRNA:   3'- uAUACCUCCugCAGCgaGUGGuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.