miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 3' -55.6 NC_004065.1 + 67101 0.66 0.955032
Target:  5'- --cUGGAcacGACGUCGCUgGaCGCCGUg -3'
miRNA:   3'- uauACCUc--CUGCAGCGAgUgGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 154175 0.66 0.955032
Target:  5'- ---cGGAGGAUGacuucCGUUC-CCACCGa -3'
miRNA:   3'- uauaCCUCCUGCa----GCGAGuGGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 184481 0.66 0.955032
Target:  5'- --cUGGGcGGcUGcCGC-CGCCGCCGCg -3'
miRNA:   3'- uauACCU-CCuGCaGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 24569 0.66 0.951131
Target:  5'- cGUcgGGAucgcgcGGuccgcgcguguCGUCGC-CGCCACCGCc -3'
miRNA:   3'- -UAuaCCU------CCu----------GCAGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 27834 0.66 0.951131
Target:  5'- ---cGG-GGugGUgGCUgGCCgugguGCCGCg -3'
miRNA:   3'- uauaCCuCCugCAgCGAgUGG-----UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 65457 0.66 0.951131
Target:  5'- --cUGGAGcGCGaaGCggucggCGCCGCCGCc -3'
miRNA:   3'- uauACCUCcUGCagCGa-----GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 98147 0.66 0.951131
Target:  5'- --cUGGcGGugauaGUCGCcgcCGCCACCGCc -3'
miRNA:   3'- uauACCuCCug---CAGCGa--GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 172096 0.67 0.942667
Target:  5'- ---cGGGGGACGUagCGCggcuCCuCCGCa -3'
miRNA:   3'- uauaCCUCCUGCA--GCGagu-GGuGGCG- -5'
16047 3' -55.6 NC_004065.1 + 109461 0.67 0.942667
Target:  5'- ---cGGAGGuccCGccCGCUCgcgccgACCGCCGCc -3'
miRNA:   3'- uauaCCUCCu--GCa-GCGAG------UGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 164838 0.67 0.942667
Target:  5'- ---aGGAGGAaacCGCgaugGCCGCCGCu -3'
miRNA:   3'- uauaCCUCCUgcaGCGag--UGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 139586 0.67 0.942667
Target:  5'- cUcgGGAGGugGcCGCggCgAUCGCCGUu -3'
miRNA:   3'- uAuaCCUCCugCaGCGa-G-UGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 135263 0.67 0.938099
Target:  5'- -gAUGGAGGACcg-GCUgGCCAgguUCGCg -3'
miRNA:   3'- uaUACCUCCUGcagCGAgUGGU---GGCG- -5'
16047 3' -55.6 NC_004065.1 + 19332 0.67 0.938099
Target:  5'- ---cGGAGGACGcaCGCUa--CAUCGCg -3'
miRNA:   3'- uauaCCUCCUGCa-GCGAgugGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 187321 0.67 0.938099
Target:  5'- ---cGGAGGAg--CGCUCGCCGaccuCUGCa -3'
miRNA:   3'- uauaCCUCCUgcaGCGAGUGGU----GGCG- -5'
16047 3' -55.6 NC_004065.1 + 79503 0.67 0.938099
Target:  5'- -gGUGGGGGugGUUcC-CAUCGCCGa -3'
miRNA:   3'- uaUACCUCCugCAGcGaGUGGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 106482 0.67 0.938099
Target:  5'- ----cGAGGACGcggCGCUgGCCACCc- -3'
miRNA:   3'- uauacCUCCUGCa--GCGAgUGGUGGcg -5'
16047 3' -55.6 NC_004065.1 + 101422 0.67 0.938099
Target:  5'- -cGUGGGGGcggcuggcgcguGCGgaugCGCcuUCGCCGCCGa -3'
miRNA:   3'- uaUACCUCC------------UGCa---GCG--AGUGGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 175550 0.67 0.937629
Target:  5'- ---cGGAGGuggcugcGCGUgCGCUCGCggcagACCGCg -3'
miRNA:   3'- uauaCCUCC-------UGCA-GCGAGUGg----UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 122102 0.67 0.933304
Target:  5'- ---cGGGGGAcaCGUCGCagACCAggaaCGCg -3'
miRNA:   3'- uauaCCUCCU--GCAGCGagUGGUg---GCG- -5'
16047 3' -55.6 NC_004065.1 + 101610 0.67 0.933304
Target:  5'- ---cGGuGG-CGgCGC-CGCCGCCGCu -3'
miRNA:   3'- uauaCCuCCuGCaGCGaGUGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.