miRNA display CGI


Results 1 - 20 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 3' -55.6 NC_004065.1 + 6115 0.73 0.678412
Target:  5'- -gAUGGAGGAaccaucaCGC-CGCCGCCGCc -3'
miRNA:   3'- uaUACCUCCUgca----GCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 14186 0.72 0.736965
Target:  5'- -gAUGGaAGGGCGUCGUgaCGCCuCCGUc -3'
miRNA:   3'- uaUACC-UCCUGCAGCGa-GUGGuGGCG- -5'
16047 3' -55.6 NC_004065.1 + 18263 0.69 0.865716
Target:  5'- --cUGGAGG-CGUCGCUCggaguAgCGCCGa -3'
miRNA:   3'- uauACCUCCuGCAGCGAG-----UgGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 18499 0.69 0.879966
Target:  5'- -----cGGGGCGUCG-UCGCCACCGa -3'
miRNA:   3'- uauaccUCCUGCAGCgAGUGGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 19332 0.67 0.938099
Target:  5'- ---cGGAGGACGcaCGCUa--CAUCGCg -3'
miRNA:   3'- uauaCCUCCUGCa-GCGAgugGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 20935 0.67 0.92828
Target:  5'- --uUGGAGG-CGggCGCacugguccUCACCACUGUg -3'
miRNA:   3'- uauACCUCCuGCa-GCG--------AGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 22808 0.72 0.746469
Target:  5'- cUGUGGGGGugGUUGgaCAUUuCCGCu -3'
miRNA:   3'- uAUACCUCCugCAGCgaGUGGuGGCG- -5'
16047 3' -55.6 NC_004065.1 + 24476 0.66 0.96545
Target:  5'- ---cGGAcauGGGCG-CGUagauggCACCGCCGCc -3'
miRNA:   3'- uauaCCU---CCUGCaGCGa-----GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 24569 0.66 0.951131
Target:  5'- cGUcgGGAucgcgcGGuccgcgcguguCGUCGC-CGCCACCGCc -3'
miRNA:   3'- -UAuaCCU------CCu----------GCAGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 27834 0.66 0.951131
Target:  5'- ---cGG-GGugGUgGCUgGCCgugguGCCGCg -3'
miRNA:   3'- uauaCCuCCugCAgCGAgUGG-----UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 29235 0.66 0.96545
Target:  5'- ----cGAGacgcCGUCGCcCGCCACCGCc -3'
miRNA:   3'- uauacCUCcu--GCAGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 30497 0.69 0.868632
Target:  5'- --cUGGAGGcgcccggcugcgcgcACGUgGCg-GCCGCCGCg -3'
miRNA:   3'- uauACCUCC---------------UGCAgCGagUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 32449 0.69 0.850664
Target:  5'- -gAUGGAGGAgGUguaCGCgUGCCGCCGa -3'
miRNA:   3'- uaUACCUCCUgCA---GCGaGUGGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 34942 0.66 0.968511
Target:  5'- --cUGGGGGucugcgccGCG-CGCUCGCCcgACCuGCa -3'
miRNA:   3'- uauACCUCC--------UGCaGCGAGUGG--UGG-CG- -5'
16047 3' -55.6 NC_004065.1 + 35200 0.7 0.834855
Target:  5'- --cUGGAGaACGUgGCg-GCCACCGCc -3'
miRNA:   3'- uauACCUCcUGCAgCGagUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 35215 0.7 0.834855
Target:  5'- ---cGGAGGAC--CGCUCGCUACaGCg -3'
miRNA:   3'- uauaCCUCCUGcaGCGAGUGGUGgCG- -5'
16047 3' -55.6 NC_004065.1 + 35556 0.68 0.911843
Target:  5'- ---aGGAGG-CGUgaGCggcggCGCCGCCGUg -3'
miRNA:   3'- uauaCCUCCuGCAg-CGa----GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 36035 0.66 0.958716
Target:  5'- ---aGGAGGugGUUGuCUCuucUCGCCGa -3'
miRNA:   3'- uauaCCUCCugCAGC-GAGu--GGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 39321 0.69 0.850664
Target:  5'- ---gGGAGaGugGUgGCUguaggcUACCACCGCc -3'
miRNA:   3'- uauaCCUC-CugCAgCGA------GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 39705 0.76 0.529796
Target:  5'- ---aGGAGGugGUC-CUCACCguaucuccgaacGCCGCg -3'
miRNA:   3'- uauaCCUCCugCAGcGAGUGG------------UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.