miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 3' -55.6 NC_004065.1 + 18263 0.69 0.865716
Target:  5'- --cUGGAGG-CGUCGCUCggaguAgCGCCGa -3'
miRNA:   3'- uauACCUCCuGCAGCGAG-----UgGUGGCg -5'
16047 3' -55.6 NC_004065.1 + 164778 0.71 0.801185
Target:  5'- ---cGGAGGACGgguuggagauugUCGagacgggCGCCACCGCc -3'
miRNA:   3'- uauaCCUCCUGC------------AGCga-----GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 40531 0.7 0.809841
Target:  5'- ---aGGAGGAaGUC-CUCcucgaGCCGCCGCa -3'
miRNA:   3'- uauaCCUCCUgCAGcGAG-----UGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 139528 0.7 0.826683
Target:  5'- ---gGGAucaGGACGUCGgaCGCCAagaCGCg -3'
miRNA:   3'- uauaCCU---CCUGCAGCgaGUGGUg--GCG- -5'
16047 3' -55.6 NC_004065.1 + 35215 0.7 0.834855
Target:  5'- ---cGGAGGAC--CGCUCGCUACaGCg -3'
miRNA:   3'- uauaCCUCCUGcaGCGAGUGGUGgCG- -5'
16047 3' -55.6 NC_004065.1 + 229486 0.7 0.834855
Target:  5'- ---aGG-GGGCGcUCGCacagggggcgCGCCACCGCg -3'
miRNA:   3'- uauaCCuCCUGC-AGCGa---------GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 195106 0.7 0.842851
Target:  5'- -----aGGGGCGUCaGCUCGCCggcggugucGCCGCa -3'
miRNA:   3'- uauaccUCCUGCAG-CGAGUGG---------UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 39321 0.69 0.850664
Target:  5'- ---gGGAGaGugGUgGCUguaggcUACCACCGCc -3'
miRNA:   3'- uauaCCUC-CugCAgCGA------GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 146062 0.69 0.858288
Target:  5'- -gAUGccGAGGACGagUGC-CGCUACCGCa -3'
miRNA:   3'- uaUAC--CUCCUGCa-GCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 120188 0.71 0.801185
Target:  5'- ---gGGAGcGACGccgCGCUCGCC-CUGCc -3'
miRNA:   3'- uauaCCUC-CUGCa--GCGAGUGGuGGCG- -5'
16047 3' -55.6 NC_004065.1 + 48868 0.71 0.777106
Target:  5'- ---gGGAGGACGUCGUgcgcgguuguuacccUacguuucucucccCGCCGCCGCc -3'
miRNA:   3'- uauaCCUCCUGCAGCG---------------A-------------GUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 170456 0.71 0.765181
Target:  5'- ---cGGAGG-CGccuUCGCU-GCCGCCGCa -3'
miRNA:   3'- uauaCCUCCuGC---AGCGAgUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 54638 0.77 0.437283
Target:  5'- -gGUGGGGGAuCGUCGUcCGCCugcuGCCGCa -3'
miRNA:   3'- uaUACCUCCU-GCAGCGaGUGG----UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 197126 0.76 0.527869
Target:  5'- uUGUGGGGGAUGcccagcggcagaCGCUCGCCGgCGCg -3'
miRNA:   3'- uAUACCUCCUGCa-----------GCGAGUGGUgGCG- -5'
16047 3' -55.6 NC_004065.1 + 39705 0.76 0.529796
Target:  5'- ---aGGAGGugGUC-CUCACCguaucuccgaacGCCGCg -3'
miRNA:   3'- uauaCCUCCugCAGcGAGUGG------------UGGCG- -5'
16047 3' -55.6 NC_004065.1 + 111033 0.75 0.558998
Target:  5'- gAUGUGGAGGAagGUCuggCACCGCCGUa -3'
miRNA:   3'- -UAUACCUCCUg-CAGcgaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 57750 0.75 0.558998
Target:  5'- ---gGGAGGAgagagaucguCGUCGC-CGCCGCCGUc -3'
miRNA:   3'- uauaCCUCCU----------GCAGCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 50330 0.75 0.568836
Target:  5'- -aGUGGuGGcacGCGUgGC-CACCGCCGCg -3'
miRNA:   3'- uaUACCuCC---UGCAgCGaGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 101849 0.74 0.598581
Target:  5'- ---cGcGGGGGCGUCGggggcgcuaUCGCCGCCGCa -3'
miRNA:   3'- uauaC-CUCCUGCAGCg--------AGUGGUGGCG- -5'
16047 3' -55.6 NC_004065.1 + 6115 0.73 0.678412
Target:  5'- -gAUGGAGGAaccaucaCGC-CGCCGCCGCc -3'
miRNA:   3'- uaUACCUCCUgca----GCGaGUGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.