Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16047 | 5' | -54.9 | NC_004065.1 | + | 134874 | 0.66 | 0.973022 |
Target: 5'- -gGCGGCGGcgACGAGAacugUCGcuacggacuCGCCUUc -3' miRNA: 3'- caCGCCGCU--UGCUCU----AGCu--------GCGGAAa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 113397 | 0.66 | 0.973022 |
Target: 5'- cUGCGGCucccucGCGAcGUCGugGCCa-- -3' miRNA: 3'- cACGCCGcu----UGCUcUAGCugCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 70337 | 0.66 | 0.973022 |
Target: 5'- -gGCGGCGAcggcgGCGAGGa--GCGCCUc- -3' miRNA: 3'- caCGCCGCU-----UGCUCUagcUGCGGAaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 91200 | 0.66 | 0.970247 |
Target: 5'- -cGuCGGCGugcGCGGcAUCGGCGCCg-- -3' miRNA: 3'- caC-GCCGCu--UGCUcUAGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 8128 | 0.66 | 0.970247 |
Target: 5'- -aGCcgGGCGccguCGAGGUCGACGCa--- -3' miRNA: 3'- caCG--CCGCuu--GCUCUAGCUGCGgaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 93241 | 0.66 | 0.970247 |
Target: 5'- -aGCGGcCGGugG-GAUCGACGUg--- -3' miRNA: 3'- caCGCC-GCUugCuCUAGCUGCGgaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 51023 | 0.66 | 0.970247 |
Target: 5'- -cGCcGCG-GCGAGAUCGAUGCa--- -3' miRNA: 3'- caCGcCGCuUGCUCUAGCUGCGgaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 119616 | 0.66 | 0.970247 |
Target: 5'- -gGCGGCGGAgGAGA-CGcCGUCg-- -3' miRNA: 3'- caCGCCGCUUgCUCUaGCuGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 168069 | 0.66 | 0.970247 |
Target: 5'- uUGCGGCGAacucgcGCGAGuagaugcggguGUCGAUGUUUUc -3' miRNA: 3'- cACGCCGCU------UGCUC-----------UAGCUGCGGAAa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 206825 | 0.66 | 0.970247 |
Target: 5'- cUGCGaauuCGGGCGGGAUCGGCgggGCCg-- -3' miRNA: 3'- cACGCc---GCUUGCUCUAGCUG---CGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 78636 | 0.66 | 0.970247 |
Target: 5'- -cGCGGUcGGCGAGggCGACGUg--- -3' miRNA: 3'- caCGCCGcUUGCUCuaGCUGCGgaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 154088 | 0.66 | 0.969376 |
Target: 5'- -aGCGGCauguccuacaacauCGAGGUCGuCGCCUUc -3' miRNA: 3'- caCGCCGcuu-----------GCUCUAGCuGCGGAAa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 165207 | 0.66 | 0.967273 |
Target: 5'- -cGuUGGCGGGCGAGAUgUGGCGCa--- -3' miRNA: 3'- caC-GCCGCUUGCUCUA-GCUGCGgaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 75784 | 0.66 | 0.967273 |
Target: 5'- -gGCGGCGGucgGCGAGGgggagCGGCGgCg-- -3' miRNA: 3'- caCGCCGCU---UGCUCUa----GCUGCgGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 64203 | 0.66 | 0.967273 |
Target: 5'- -gGCGGCGGGCGgAGGcagugUCGGCGgCg-- -3' miRNA: 3'- caCGCCGCUUGC-UCU-----AGCUGCgGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 130074 | 0.66 | 0.965391 |
Target: 5'- -cGCGGCGGugGucGAcuacggcgaugccguUCGGCGCCc-- -3' miRNA: 3'- caCGCCGCUugCu-CU---------------AGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 162332 | 0.66 | 0.964095 |
Target: 5'- -gGCGGCGGAagaaGAGAUgGAgggccCGCCg-- -3' miRNA: 3'- caCGCCGCUUg---CUCUAgCU-----GCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 118818 | 0.66 | 0.964095 |
Target: 5'- cGUGUGGCGAGCGuG-UCGACuGUUg-- -3' miRNA: 3'- -CACGCCGCUUGCuCuAGCUG-CGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 65447 | 0.66 | 0.964095 |
Target: 5'- -cGUGGUGGcucuggagcGCGAagcGGUCGGCGCCg-- -3' miRNA: 3'- caCGCCGCU---------UGCU---CUAGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 130589 | 0.66 | 0.964095 |
Target: 5'- -gGCGcGCGAuguCGAGG-CGGCGUCUg- -3' miRNA: 3'- caCGC-CGCUu--GCUCUaGCUGCGGAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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