miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 5' -54.9 NC_004065.1 + 91200 0.66 0.970247
Target:  5'- -cGuCGGCGugcGCGGcAUCGGCGCCg-- -3'
miRNA:   3'- caC-GCCGCu--UGCUcUAGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 165207 0.66 0.967273
Target:  5'- -cGuUGGCGGGCGAGAUgUGGCGCa--- -3'
miRNA:   3'- caC-GCCGCUUGCUCUA-GCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 30079 0.66 0.960707
Target:  5'- -gGCGGCGGugGAag-CGAgGCCa-- -3'
miRNA:   3'- caCGCCGCUugCUcuaGCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 168069 0.66 0.970247
Target:  5'- uUGCGGCGAacucgcGCGAGuagaugcggguGUCGAUGUUUUc -3'
miRNA:   3'- cACGCCGCU------UGCUC-----------UAGCUGCGGAAa -5'
16047 5' -54.9 NC_004065.1 + 126250 0.66 0.960707
Target:  5'- cGUGCGGCGGAuCGAGccgcccagCGcguucagcaGCGCCUg- -3'
miRNA:   3'- -CACGCCGCUU-GCUCua------GC---------UGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 157121 0.66 0.960707
Target:  5'- -cGCGacucGCGAACGAGGUCGA-GUCg-- -3'
miRNA:   3'- caCGC----CGCUUGCUCUAGCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 118818 0.66 0.964095
Target:  5'- cGUGUGGCGAGCGuG-UCGACuGUUg-- -3'
miRNA:   3'- -CACGCCGCUUGCuCuAGCUG-CGGaaa -5'
16047 5' -54.9 NC_004065.1 + 64203 0.66 0.967273
Target:  5'- -gGCGGCGGGCGgAGGcagugUCGGCGgCg-- -3'
miRNA:   3'- caCGCCGCUUGC-UCU-----AGCUGCgGaaa -5'
16047 5' -54.9 NC_004065.1 + 75784 0.66 0.967273
Target:  5'- -gGCGGCGGucgGCGAGGgggagCGGCGgCg-- -3'
miRNA:   3'- caCGCCGCU---UGCUCUa----GCUGCgGaaa -5'
16047 5' -54.9 NC_004065.1 + 70337 0.66 0.973022
Target:  5'- -gGCGGCGAcggcgGCGAGGa--GCGCCUc- -3'
miRNA:   3'- caCGCCGCU-----UGCUCUagcUGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 83238 0.66 0.964095
Target:  5'- -gGaCGGCGAACcuGAGAUCGACGa---- -3'
miRNA:   3'- caC-GCCGCUUG--CUCUAGCUGCggaaa -5'
16047 5' -54.9 NC_004065.1 + 113397 0.66 0.973022
Target:  5'- cUGCGGCucccucGCGAcGUCGugGCCa-- -3'
miRNA:   3'- cACGCCGcu----UGCUcUAGCugCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 65447 0.66 0.964095
Target:  5'- -cGUGGUGGcucuggagcGCGAagcGGUCGGCGCCg-- -3'
miRNA:   3'- caCGCCGCU---------UGCU---CUAGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 130176 0.66 0.960707
Target:  5'- -gGCGGCGAuCGGGGcgcaGACGCUg-- -3'
miRNA:   3'- caCGCCGCUuGCUCUag--CUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 153660 0.66 0.960707
Target:  5'- -gGCGGCgccggcgcGAugGAGAUCGacaagaauuggGCGCCg-- -3'
miRNA:   3'- caCGCCG--------CUugCUCUAGC-----------UGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 130074 0.66 0.965391
Target:  5'- -cGCGGCGGugGucGAcuacggcgaugccguUCGGCGCCc-- -3'
miRNA:   3'- caCGCCGCUugCu-CU---------------AGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 130589 0.66 0.964095
Target:  5'- -gGCGcGCGAuguCGAGG-CGGCGUCUg- -3'
miRNA:   3'- caCGC-CGCUu--GCUCUaGCUGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 134874 0.66 0.973022
Target:  5'- -gGCGGCGGcgACGAGAacugUCGcuacggacuCGCCUUc -3'
miRNA:   3'- caCGCCGCU--UGCUCU----AGCu--------GCGGAAa -5'
16047 5' -54.9 NC_004065.1 + 162332 0.66 0.964095
Target:  5'- -gGCGGCGGAagaaGAGAUgGAgggccCGCCg-- -3'
miRNA:   3'- caCGCCGCUUg---CUCUAgCU-----GCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 165386 0.66 0.960707
Target:  5'- --aCGGCGGACGcgcGGUCGAUgGCCUUc -3'
miRNA:   3'- cacGCCGCUUGCu--CUAGCUG-CGGAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.