Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16047 | 5' | -54.9 | NC_004065.1 | + | 80314 | 1.04 | 0.010323 |
Target: 5'- gGUGCGGCGAACGAGAUCGACGCCUUUc -3' miRNA: 3'- -CACGCCGCUUGCUCUAGCUGCGGAAA- -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 130002 | 0.77 | 0.454245 |
Target: 5'- -gGCGGCGGACGAGG-CGAUGCUg-- -3' miRNA: 3'- caCGCCGCUUGCUCUaGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 174138 | 0.77 | 0.463374 |
Target: 5'- gGUGCGGCaucggccuGGACGccGGAUCGACGCCg-- -3' miRNA: 3'- -CACGCCG--------CUUGC--UCUAGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 28299 | 0.76 | 0.549361 |
Target: 5'- -gGUGGCGAACGAGAUC-ACGUCg-- -3' miRNA: 3'- caCGCCGCUUGCUCUAGcUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 129895 | 0.76 | 0.549361 |
Target: 5'- cUGCGGCGGACccuGAUCGGgGCCUg- -3' miRNA: 3'- cACGCCGCUUGcu-CUAGCUgCGGAaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 70347 | 0.75 | 0.609354 |
Target: 5'- --cUGGCGAACGAGAUCGAgaGCCg-- -3' miRNA: 3'- cacGCCGCUUGCUCUAGCUg-CGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 30632 | 0.73 | 0.669921 |
Target: 5'- -aGCGGCaccugGGACGAGAUggaCGACGCCa-- -3' miRNA: 3'- caCGCCG-----CUUGCUCUA---GCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 170429 | 0.73 | 0.689956 |
Target: 5'- cUGCGGCGGAuCGAcGAagGACGCCg-- -3' miRNA: 3'- cACGCCGCUU-GCU-CUagCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 58600 | 0.73 | 0.689956 |
Target: 5'- -cGaCGGCGGAguCGAGAUCGACGCg--- -3' miRNA: 3'- caC-GCCGCUU--GCUCUAGCUGCGgaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 186899 | 0.73 | 0.698915 |
Target: 5'- -cGCGGCcggcggucuucgcGAGCGcGGAUCGGCGCCg-- -3' miRNA: 3'- caCGCCG-------------CUUGC-UCUAGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 76739 | 0.73 | 0.699907 |
Target: 5'- -gGCGG-GGACGGGcgCGGCGCCg-- -3' miRNA: 3'- caCGCCgCUUGCUCuaGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 120569 | 0.72 | 0.729394 |
Target: 5'- -cGCGaGCGGGCGGGAccucCGGCGCCg-- -3' miRNA: 3'- caCGC-CGCUUGCUCUa---GCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 166503 | 0.72 | 0.73907 |
Target: 5'- -cGCGGCGAucuacggccGCGAGggCGAgGCCa-- -3' miRNA: 3'- caCGCCGCU---------UGCUCuaGCUgCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 111917 | 0.72 | 0.748655 |
Target: 5'- -cGCGGCG-ACGAGA--GACGCCa-- -3' miRNA: 3'- caCGCCGCuUGCUCUagCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 140356 | 0.72 | 0.767518 |
Target: 5'- cUGCGGCGcguuCGGGA-CGACGCCc-- -3' miRNA: 3'- cACGCCGCuu--GCUCUaGCUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 97528 | 0.71 | 0.785911 |
Target: 5'- aUGCGcGCGAACGAcgcGAUCaGCGCCa-- -3' miRNA: 3'- cACGC-CGCUUGCU---CUAGcUGCGGaaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 210698 | 0.71 | 0.794909 |
Target: 5'- aGUaCGGCGGAgaccCGAGcguuUCGACGCCUUUg -3' miRNA: 3'- -CAcGCCGCUU----GCUCu---AGCUGCGGAAA- -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 119445 | 0.71 | 0.794909 |
Target: 5'- -cGUGGUGGucgcCGAGAcCGACGCCUg- -3' miRNA: 3'- caCGCCGCUu---GCUCUaGCUGCGGAaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 168990 | 0.71 | 0.803764 |
Target: 5'- -cGCGGCGGaccucggagGCGAcAUCGugGCCUc- -3' miRNA: 3'- caCGCCGCU---------UGCUcUAGCugCGGAaa -5' |
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16047 | 5' | -54.9 | NC_004065.1 | + | 116589 | 0.71 | 0.803764 |
Target: 5'- -cGCagGGCGAACGuGAUCG-CGUCUUUg -3' miRNA: 3'- caCG--CCGCUUGCuCUAGCuGCGGAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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