miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 5' -54.9 NC_004065.1 + 130589 0.66 0.964095
Target:  5'- -gGCGcGCGAuguCGAGG-CGGCGUCUg- -3'
miRNA:   3'- caCGC-CGCUu--GCUCUaGCUGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 153660 0.66 0.960707
Target:  5'- -gGCGGCgccggcgcGAugGAGAUCGacaagaauuggGCGCCg-- -3'
miRNA:   3'- caCGCCG--------CUugCUCUAGC-----------UGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 130176 0.66 0.960707
Target:  5'- -gGCGGCGAuCGGGGcgcaGACGCUg-- -3'
miRNA:   3'- caCGCCGCUuGCUCUag--CUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 165386 0.66 0.960707
Target:  5'- --aCGGCGGACGcgcGGUCGAUgGCCUUc -3'
miRNA:   3'- cacGCCGCUUGCu--CUAGCUG-CGGAAa -5'
16047 5' -54.9 NC_004065.1 + 157121 0.66 0.960707
Target:  5'- -cGCGacucGCGAACGAGGUCGA-GUCg-- -3'
miRNA:   3'- caCGC----CGCUUGCUCUAGCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 126250 0.66 0.960707
Target:  5'- cGUGCGGCGGAuCGAGccgcccagCGcguucagcaGCGCCUg- -3'
miRNA:   3'- -CACGCCGCUU-GCUCua------GC---------UGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 30079 0.66 0.960707
Target:  5'- -gGCGGCGGugGAag-CGAgGCCa-- -3'
miRNA:   3'- caCGCCGCUugCUcuaGCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 91237 0.67 0.957104
Target:  5'- aGUGUagGGauaGAGCGGGAccUUGACGCCa-- -3'
miRNA:   3'- -CACG--CCg--CUUGCUCU--AGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 66556 0.67 0.956732
Target:  5'- -cGCGGCGuGCGAGucguucucGUCGcuggcgaGCGCCUg- -3'
miRNA:   3'- caCGCCGCuUGCUC--------UAGC-------UGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 59741 0.67 0.953282
Target:  5'- -gGCGGCGAugGugccGAccgCGugGCCg-- -3'
miRNA:   3'- caCGCCGCUugCu---CUa--GCugCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 224537 0.67 0.953282
Target:  5'- cGUGCuGCGGGCGAGAcgUgGAUGUCg-- -3'
miRNA:   3'- -CACGcCGCUUGCUCU--AgCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 68806 0.67 0.953282
Target:  5'- cGUGCgGGCGcugcGCGAGGUCGAgcUGCUg-- -3'
miRNA:   3'- -CACG-CCGCu---UGCUCUAGCU--GCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 33005 0.67 0.953282
Target:  5'- -gGcCGGUG-ACGAGGUCGACGUa--- -3'
miRNA:   3'- caC-GCCGCuUGCUCUAGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 112563 0.67 0.953282
Target:  5'- -gGCGGCGAGCGgccgcggagccGGA-CGACGCa--- -3'
miRNA:   3'- caCGCCGCUUGC-----------UCUaGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 59569 0.67 0.953282
Target:  5'- cUGCGGCGGcaGCGAa---GGCGCCUc- -3'
miRNA:   3'- cACGCCGCU--UGCUcuagCUGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 147623 0.67 0.950882
Target:  5'- -cGCGGUcgucaacaacagcacGGGCGAGAUCGAcugcguCGCCa-- -3'
miRNA:   3'- caCGCCG---------------CUUGCUCUAGCU------GCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 143115 0.67 0.949237
Target:  5'- -cGCGcGCGccgccgagGGCGAGAcCGGCGCCg-- -3'
miRNA:   3'- caCGC-CGC--------UUGCUCUaGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 118339 0.67 0.944966
Target:  5'- -gGCGGUagaGAUGAGAUCGACGUa--- -3'
miRNA:   3'- caCGCCGc--UUGCUCUAGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 127221 0.67 0.944966
Target:  5'- -aGCGGCGGccGCGAgGAUCgGGCGCg--- -3'
miRNA:   3'- caCGCCGCU--UGCU-CUAG-CUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 200644 0.67 0.944966
Target:  5'- -cGCGcuCGAgGCGAGAUCGGCGUUUUa -3'
miRNA:   3'- caCGCc-GCU-UGCUCUAGCUGCGGAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.