miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 5' -54.9 NC_004065.1 + 6260 0.71 0.821011
Target:  5'- cGUGCGGCGGggACGAGAggGA-GCCg-- -3'
miRNA:   3'- -CACGCCGCU--UGCUCUagCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 7819 0.68 0.908591
Target:  5'- cGUGcCGGUGAAUGGGGUCGuguCGCg--- -3'
miRNA:   3'- -CAC-GCCGCUUGCUCUAGCu--GCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 8128 0.66 0.970247
Target:  5'- -aGCcgGGCGccguCGAGGUCGACGCa--- -3'
miRNA:   3'- caCG--CCGCuu--GCUCUAGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 23467 0.69 0.902468
Target:  5'- -cGCGGCucGCGAcGAUgaCGACGCCg-- -3'
miRNA:   3'- caCGCCGcuUGCU-CUA--GCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 26628 0.68 0.920147
Target:  5'- aGUGCGGCGAcaGCGGGAgCaGCGUCc-- -3'
miRNA:   3'- -CACGCCGCU--UGCUCUaGcUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 27376 0.71 0.821011
Target:  5'- -cGCGGCGAcaACGugaugagcacucAGGUCGAgGCCUg- -3'
miRNA:   3'- caCGCCGCU--UGC------------UCUAGCUgCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 28296 0.71 0.803764
Target:  5'- -cGUGGCGAugGAcaaaucucgGAUCGACgGCCUc- -3'
miRNA:   3'- caCGCCGCUugCU---------CUAGCUG-CGGAaa -5'
16047 5' -54.9 NC_004065.1 + 28299 0.76 0.549361
Target:  5'- -gGUGGCGAACGAGAUC-ACGUCg-- -3'
miRNA:   3'- caCGCCGCUUGCUCUAGcUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 30079 0.66 0.960707
Target:  5'- -gGCGGCGGugGAag-CGAgGCCa-- -3'
miRNA:   3'- caCGCCGCUugCUcuaGCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 30632 0.73 0.669921
Target:  5'- -aGCGGCaccugGGACGAGAUggaCGACGCCa-- -3'
miRNA:   3'- caCGCCG-----CUUGCUCUA---GCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 31631 0.7 0.861073
Target:  5'- cGUGCGGCuGAcgacgccgggcuACGGGAcgUCGGCGCUg-- -3'
miRNA:   3'- -CACGCCG-CU------------UGCUCU--AGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 33005 0.67 0.953282
Target:  5'- -gGcCGGUG-ACGAGGUCGACGUa--- -3'
miRNA:   3'- caC-GCCGCuUGCUCUAGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 48653 0.7 0.853438
Target:  5'- -cGUGGCGAagAUGGGAUCGA-GCCg-- -3'
miRNA:   3'- caCGCCGCU--UGCUCUAGCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 51023 0.66 0.970247
Target:  5'- -cGCcGCG-GCGAGAUCGAUGCa--- -3'
miRNA:   3'- caCGcCGCuUGCUCUAGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 56144 0.68 0.930773
Target:  5'- -gGCGGCGGcccacacacacgGCGuGA-CGGCGCCUc- -3'
miRNA:   3'- caCGCCGCU------------UGCuCUaGCUGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 58600 0.73 0.689956
Target:  5'- -cGaCGGCGGAguCGAGAUCGACGCg--- -3'
miRNA:   3'- caC-GCCGCUU--GCUCUAGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 59065 0.69 0.875731
Target:  5'- -cGCGGagauguaugUGAGCGAGAUCGcggcGCGCCg-- -3'
miRNA:   3'- caCGCC---------GCUUGCUCUAGC----UGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 59569 0.67 0.953282
Target:  5'- cUGCGGCGGcaGCGAa---GGCGCCUc- -3'
miRNA:   3'- cACGCCGCU--UGCUcuagCUGCGGAaa -5'
16047 5' -54.9 NC_004065.1 + 59741 0.67 0.953282
Target:  5'- -gGCGGCGAugGugccGAccgCGugGCCg-- -3'
miRNA:   3'- caCGCCGCUugCu---CUa--GCugCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 60149 0.67 0.935736
Target:  5'- --uUGGgGAACG-GAUCGGCGCCc-- -3'
miRNA:   3'- cacGCCgCUUGCuCUAGCUGCGGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.