miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16047 5' -54.9 NC_004065.1 + 132113 0.68 0.930773
Target:  5'- -cGCGGCGGuuCGAGGUgaACGCCg-- -3'
miRNA:   3'- caCGCCGCUu-GCUCUAgcUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 48653 0.7 0.853438
Target:  5'- -cGUGGCGAagAUGGGAUCGA-GCCg-- -3'
miRNA:   3'- caCGCCGCU--UGCUCUAGCUgCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 59065 0.69 0.875731
Target:  5'- -cGCGGagauguaugUGAGCGAGAUCGcggcGCGCCg-- -3'
miRNA:   3'- caCGCC---------GCUUGCUCUAGC----UGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 26628 0.68 0.920147
Target:  5'- aGUGCGGCGAcaGCGGGAgCaGCGUCc-- -3'
miRNA:   3'- -CACGCCGCU--UGCUCUaGcUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 131260 0.68 0.920147
Target:  5'- -gGCGGCGGACGuucugCG-CGCCUUc -3'
miRNA:   3'- caCGCCGCUUGCucua-GCuGCGGAAa -5'
16047 5' -54.9 NC_004065.1 + 64883 0.68 0.920147
Target:  5'- -cGCGGCGcGCGucGGAgaagagCGGCGCCa-- -3'
miRNA:   3'- caCGCCGCuUGC--UCUa-----GCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 77203 0.68 0.920147
Target:  5'- -cGCGGCGGcgccccgcacgGCGAuggccacgcuGAUCGugGCCa-- -3'
miRNA:   3'- caCGCCGCU-----------UGCU----------CUAGCugCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 200986 0.68 0.920147
Target:  5'- -cGUGGUG-ACGGGucgCGACGCCg-- -3'
miRNA:   3'- caCGCCGCuUGCUCua-GCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 121223 0.68 0.920147
Target:  5'- -cGCGGCuGAACGgccgccacgccAGGuUCGACGCCg-- -3'
miRNA:   3'- caCGCCG-CUUGC-----------UCU-AGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 71687 0.7 0.845608
Target:  5'- -gGCGGCGGcaACGGGAgCGGCGCg--- -3'
miRNA:   3'- caCGCCGCU--UGCUCUaGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 116589 0.71 0.803764
Target:  5'- -cGCagGGCGAACGuGAUCG-CGUCUUUg -3'
miRNA:   3'- caCG--CCGCUUGCuCUAGCuGCGGAAA- -5'
16047 5' -54.9 NC_004065.1 + 210698 0.71 0.794909
Target:  5'- aGUaCGGCGGAgaccCGAGcguuUCGACGCCUUUg -3'
miRNA:   3'- -CAcGCCGCUU----GCUCu---AGCUGCGGAAA- -5'
16047 5' -54.9 NC_004065.1 + 28299 0.76 0.549361
Target:  5'- -gGUGGCGAACGAGAUC-ACGUCg-- -3'
miRNA:   3'- caCGCCGCUUGCUCUAGcUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 70347 0.75 0.609354
Target:  5'- --cUGGCGAACGAGAUCGAgaGCCg-- -3'
miRNA:   3'- cacGCCGCUUGCUCUAGCUg-CGGaaa -5'
16047 5' -54.9 NC_004065.1 + 170429 0.73 0.689956
Target:  5'- cUGCGGCGGAuCGAcGAagGACGCCg-- -3'
miRNA:   3'- cACGCCGCUU-GCU-CUagCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 58600 0.73 0.689956
Target:  5'- -cGaCGGCGGAguCGAGAUCGACGCg--- -3'
miRNA:   3'- caC-GCCGCUU--GCUCUAGCUGCGgaaa -5'
16047 5' -54.9 NC_004065.1 + 76739 0.73 0.699907
Target:  5'- -gGCGG-GGACGGGcgCGGCGCCg-- -3'
miRNA:   3'- caCGCCgCUUGCUCuaGCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 120569 0.72 0.729394
Target:  5'- -cGCGaGCGGGCGGGAccucCGGCGCCg-- -3'
miRNA:   3'- caCGC-CGCUUGCUCUa---GCUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 97528 0.71 0.785911
Target:  5'- aUGCGcGCGAACGAcgcGAUCaGCGCCa-- -3'
miRNA:   3'- cACGC-CGCUUGCU---CUAGcUGCGGaaa -5'
16047 5' -54.9 NC_004065.1 + 119445 0.71 0.794909
Target:  5'- -cGUGGUGGucgcCGAGAcCGACGCCUg- -3'
miRNA:   3'- caCGCCGCUu---GCUCUaGCUGCGGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.