miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1605 3' -59.9 NC_001347.2 + 1908 0.66 0.867574
Target:  5'- gGCUGGcugGCGCUGGGcgcGGUgcuGCCCg- -3'
miRNA:   3'- gCGGCCa--UGCGGCCCuu-CCA---UGGGac -5'
1605 3' -59.9 NC_001347.2 + 226802 0.66 0.867574
Target:  5'- uGCCGG--CGCCGGGcGAGGaauUGCUCa- -3'
miRNA:   3'- gCGGCCauGCGGCCC-UUCC---AUGGGac -5'
1605 3' -59.9 NC_001347.2 + 136206 0.66 0.844197
Target:  5'- gCGCCGGggggcggcgggcACGCCGGGuuuuauAGGUuuucagauGCCCc- -3'
miRNA:   3'- -GCGGCCa-----------UGCGGCCCu-----UCCA--------UGGGac -5'
1605 3' -59.9 NC_001347.2 + 8176 0.66 0.830268
Target:  5'- uGCCGGUgGgGCCGGGAcgGGGUgggacgagaGCCg-- -3'
miRNA:   3'- gCGGCCA-UgCGGCCCU--UCCA---------UGGgac -5'
1605 3' -59.9 NC_001347.2 + 165044 0.67 0.822304
Target:  5'- uGCUGGgcgccACGCCaGGAGGGcaACCCg- -3'
miRNA:   3'- gCGGCCa----UGCGGcCCUUCCa-UGGGac -5'
1605 3' -59.9 NC_001347.2 + 42912 0.67 0.814186
Target:  5'- aGCUGuccgcCGCCGGGAAGGUGgUCUc -3'
miRNA:   3'- gCGGCcau--GCGGCCCUUCCAUgGGAc -5'
1605 3' -59.9 NC_001347.2 + 43098 0.67 0.797518
Target:  5'- gCGCCGGcAUGCCGaGGuGGG-GCCaCUGc -3'
miRNA:   3'- -GCGGCCaUGCGGC-CCuUCCaUGG-GAC- -5'
1605 3' -59.9 NC_001347.2 + 105622 0.67 0.797518
Target:  5'- aGCUGGUGCuGCCcuGGAucGUACCCa- -3'
miRNA:   3'- gCGGCCAUG-CGGc-CCUucCAUGGGac -5'
1605 3' -59.9 NC_001347.2 + 192254 0.67 0.792412
Target:  5'- uCGCCGGcccgagcGCGCCGGGGAgaagaaccucuucccGGgcCCCg- -3'
miRNA:   3'- -GCGGCCa------UGCGGCCCUU---------------CCauGGGac -5'
1605 3' -59.9 NC_001347.2 + 35305 0.67 0.78032
Target:  5'- -aCCGG-GCGCCGGGAcucuGGUGCUaUGg -3'
miRNA:   3'- gcGGCCaUGCGGCCCUu---CCAUGGgAC- -5'
1605 3' -59.9 NC_001347.2 + 135826 0.68 0.771541
Target:  5'- aGCCGGcggagguCGCCGGGAgcagcgAGGgauCCCg- -3'
miRNA:   3'- gCGGCCau-----GCGGCCCU------UCCau-GGGac -5'
1605 3' -59.9 NC_001347.2 + 150781 0.69 0.669378
Target:  5'- uGCUGGU--GCCGGGuGGcgaGUACCCUGu -3'
miRNA:   3'- gCGGCCAugCGGCCCuUC---CAUGGGAC- -5'
1605 3' -59.9 NC_001347.2 + 157857 1.07 0.003045
Target:  5'- gCGCCGGUACGCCGGGAAGGUACCCUGc -3'
miRNA:   3'- -GCGGCCAUGCGGCCCUUCCAUGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.