miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 3' -63.8 NC_004065.1 + 20891 0.65 0.706533
Target:  5'- cCGCGGC-GCUGGggaauCCGCUcgcuuucGCCUCGUu -3'
miRNA:   3'- aGCGCCGcCGGCU-----GGCGA-------CGGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 184484 0.66 0.698212
Target:  5'- -gGCGGCuGCCGccgccGCCGCggcGCCggGUGg -3'
miRNA:   3'- agCGCCGcCGGC-----UGGCGa--CGGagCAC- -5'
16054 3' -63.8 NC_004065.1 + 60891 0.66 0.698212
Target:  5'- cUCGCGaGCGucucgggaacuGCUGGCCGCgGCCcgCGUc -3'
miRNA:   3'- -AGCGC-CGC-----------CGGCUGGCGaCGGa-GCAc -5'
16054 3' -63.8 NC_004065.1 + 31753 0.66 0.698212
Target:  5'- aCGCGGUGuCgGACgCGUUGCacugCUCGUGg -3'
miRNA:   3'- aGCGCCGCcGgCUG-GCGACG----GAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 107272 0.66 0.698212
Target:  5'- gUCGCGcGUgaugaGGCCGcACUGCuUGCCUC-UGg -3'
miRNA:   3'- -AGCGC-CG-----CCGGC-UGGCG-ACGGAGcAC- -5'
16054 3' -63.8 NC_004065.1 + 69127 0.66 0.692643
Target:  5'- gCGCGGCGcGCCGACaaggugcuggggaaGCUGUCgaCGcUGg -3'
miRNA:   3'- aGCGCCGC-CGGCUGg-------------CGACGGa-GC-AC- -5'
16054 3' -63.8 NC_004065.1 + 149703 0.66 0.688922
Target:  5'- aCGCcgGGgGGCCGcgGCCGCgccgGcCCUCGg- -3'
miRNA:   3'- aGCG--CCgCCGGC--UGGCGa---C-GGAGCac -5'
16054 3' -63.8 NC_004065.1 + 100018 0.66 0.688922
Target:  5'- aUCGC--CGGCuCG-UCGCUGCCUCGg- -3'
miRNA:   3'- -AGCGccGCCG-GCuGGCGACGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 122496 0.66 0.679592
Target:  5'- cCGCagcugGGCGGUCG-CCGCgcgcaccuCCUCGUGc -3'
miRNA:   3'- aGCG-----CCGCCGGCuGGCGac------GGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 141209 0.66 0.679592
Target:  5'- -gGuCGGgGGUgGACCGCaGCCUCa-- -3'
miRNA:   3'- agC-GCCgCCGgCUGGCGaCGGAGcac -5'
16054 3' -63.8 NC_004065.1 + 17958 0.66 0.679592
Target:  5'- gUCGcCGGaCGGUCGuCCGuCUGCCgcgCGa- -3'
miRNA:   3'- -AGC-GCC-GCCGGCuGGC-GACGGa--GCac -5'
16054 3' -63.8 NC_004065.1 + 98258 0.66 0.679592
Target:  5'- cUCGggaCGGCGGCCcugGGCgCGC-GCCUCGc- -3'
miRNA:   3'- -AGC---GCCGCCGG---CUG-GCGaCGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 179690 0.66 0.67585
Target:  5'- aUCGCGGCGGUggccacgCGugCcaccacucucuguuGUUGCCUCGc- -3'
miRNA:   3'- -AGCGCCGCCG-------GCugG--------------CGACGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 129013 0.66 0.670229
Target:  5'- aUCGCgccuGGCGGCCGACuCGUgcgUGUaCUaCGUGu -3'
miRNA:   3'- -AGCG----CCGCCGGCUG-GCG---ACG-GA-GCAC- -5'
16054 3' -63.8 NC_004065.1 + 76750 0.66 0.670229
Target:  5'- gCGCGGC-GCCGGCg---GCCUCGUc -3'
miRNA:   3'- aGCGCCGcCGGCUGgcgaCGGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 53855 0.66 0.670229
Target:  5'- uUCGCGGCGGUCGcGCCGggaugGCCacucCGUu -3'
miRNA:   3'- -AGCGCCGCCGGC-UGGCga---CGGa---GCAc -5'
16054 3' -63.8 NC_004065.1 + 67541 0.66 0.660839
Target:  5'- -aGUGGCgcuccucguccuGGCCGGCCGCgcgagGCCUuCGc- -3'
miRNA:   3'- agCGCCG------------CCGGCUGGCGa----CGGA-GCac -5'
16054 3' -63.8 NC_004065.1 + 65186 0.66 0.660839
Target:  5'- -aGCGGCGGCC-AUCGCgguuuccuCCUCGg- -3'
miRNA:   3'- agCGCCGCCGGcUGGCGac------GGAGCac -5'
16054 3' -63.8 NC_004065.1 + 57960 0.66 0.660839
Target:  5'- cCGCGGCGGCCacggagGACCGCgacgagGaCUC-UGa -3'
miRNA:   3'- aGCGCCGCCGG------CUGGCGa-----CgGAGcAC- -5'
16054 3' -63.8 NC_004065.1 + 208050 0.66 0.660839
Target:  5'- cCGUGGCGGCCcucACCGUccUGCCgaCGa- -3'
miRNA:   3'- aGCGCCGCCGGc--UGGCG--ACGGa-GCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.