miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 3' -63.8 NC_004065.1 + 83290 1.08 0.001212
Target:  5'- cUCGCGGCGGCCGACCGCUGCCUCGUGa -3'
miRNA:   3'- -AGCGCCGCCGGCUGGCGACGGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 160990 0.78 0.146261
Target:  5'- -gGCGGCGGCgGGCUGCUGCUgcuaucCGUGa -3'
miRNA:   3'- agCGCCGCCGgCUGGCGACGGa-----GCAC- -5'
16054 3' -63.8 NC_004065.1 + 18072 0.77 0.160714
Target:  5'- aCGaUGGCGGCagCGACCGCcgcaGCCUCGUGg -3'
miRNA:   3'- aGC-GCCGCCG--GCUGGCGa---CGGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 36106 0.77 0.180582
Target:  5'- cCGUGGCGGCaacggGGCCGCUGCCggCGg- -3'
miRNA:   3'- aGCGCCGCCGg----CUGGCGACGGa-GCac -5'
16054 3' -63.8 NC_004065.1 + 139670 0.77 0.180582
Target:  5'- gUGCGGCGGCCG-CUGCUGUCacaCGUGc -3'
miRNA:   3'- aGCGCCGCCGGCuGGCGACGGa--GCAC- -5'
16054 3' -63.8 NC_004065.1 + 26968 0.76 0.184809
Target:  5'- -gGCGGUGGUgGugCGCUGCCUCa-- -3'
miRNA:   3'- agCGCCGCCGgCugGCGACGGAGcac -5'
16054 3' -63.8 NC_004065.1 + 108805 0.76 0.20306
Target:  5'- gCGUGGCGGCCGuucaGCCGCggcaacaggcugacgGCCUCGg- -3'
miRNA:   3'- aGCGCCGCCGGC----UGGCGa--------------CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 151364 0.75 0.226904
Target:  5'- cCGCGGC-GCCGGCCGCUGCgCUgGc- -3'
miRNA:   3'- aGCGCCGcCGGCUGGCGACG-GAgCac -5'
16054 3' -63.8 NC_004065.1 + 118173 0.74 0.248091
Target:  5'- -gGCGGCGGCCGucACgGCUGCCgcCGUu -3'
miRNA:   3'- agCGCCGCCGGC--UGgCGACGGa-GCAc -5'
16054 3' -63.8 NC_004065.1 + 208942 0.74 0.248091
Target:  5'- gUCGUGGCGGCCGAacuguuCgGCUGCCggaugGUGa -3'
miRNA:   3'- -AGCGCCGCCGGCU------GgCGACGGag---CAC- -5'
16054 3' -63.8 NC_004065.1 + 110185 0.74 0.253637
Target:  5'- cUGCGGCGGCCGcgacgcGCCGCcGCC-CGUc -3'
miRNA:   3'- aGCGCCGCCGGC------UGGCGaCGGaGCAc -5'
16054 3' -63.8 NC_004065.1 + 78895 0.74 0.259285
Target:  5'- aUCGCGGCGuuGCCGccgccuucGCUGCUGCCgUCGUc -3'
miRNA:   3'- -AGCGCCGC--CGGC--------UGGCGACGG-AGCAc -5'
16054 3' -63.8 NC_004065.1 + 99949 0.74 0.265034
Target:  5'- cCGCGGCGG-CGGCUGCUGCUgCGa- -3'
miRNA:   3'- aGCGCCGCCgGCUGGCGACGGaGCac -5'
16054 3' -63.8 NC_004065.1 + 101282 0.73 0.295339
Target:  5'- cUGCcGCuGCCGACgGCUGCCUCGg- -3'
miRNA:   3'- aGCGcCGcCGGCUGgCGACGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 6910 0.73 0.301715
Target:  5'- aCGCGGCGGCUucaGCUGCgggcacgGCCUCGg- -3'
miRNA:   3'- aGCGCCGCCGGc--UGGCGa------CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 81184 0.72 0.342187
Target:  5'- aUCGCGGCGGCCGcCuCGUgGCCgagCGa- -3'
miRNA:   3'- -AGCGCCGCCGGCuG-GCGaCGGa--GCac -5'
16054 3' -63.8 NC_004065.1 + 101614 0.72 0.342187
Target:  5'- -gGCGGCGccGCCG-CCGCUGCCgcUCGg- -3'
miRNA:   3'- agCGCCGC--CGGCuGGCGACGG--AGCac -5'
16054 3' -63.8 NC_004065.1 + 209551 0.72 0.347156
Target:  5'- cCGCGGgacugaaggaggccCGGCCGGCUGCUGgCgggCGUGc -3'
miRNA:   3'- aGCGCC--------------GCCGGCUGGCGACgGa--GCAC- -5'
16054 3' -63.8 NC_004065.1 + 59741 0.72 0.356521
Target:  5'- -gGCGGCGaugguGCCGACCGCgugGCCgaugGUGg -3'
miRNA:   3'- agCGCCGC-----CGGCUGGCGa--CGGag--CAC- -5'
16054 3' -63.8 NC_004065.1 + 141604 0.72 0.363845
Target:  5'- gCGaCGGCGGCgGGcuCCGCUGCCggcgGUGg -3'
miRNA:   3'- aGC-GCCGCCGgCU--GGCGACGGag--CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.