miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 3' -63.8 NC_004065.1 + 115901 0.66 0.65143
Target:  5'- cUGCGGCucggGGCCG-UCGUcgGCCUCGg- -3'
miRNA:   3'- aGCGCCG----CCGGCuGGCGa-CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 30519 0.66 0.65143
Target:  5'- aCGUGGCGGCCG-CCGCguggGaagagaCguaCGUGa -3'
miRNA:   3'- aGCGCCGCCGGCuGGCGa---Cg-----Ga--GCAC- -5'
16054 3' -63.8 NC_004065.1 + 31895 0.66 0.65143
Target:  5'- -gGCGGCGGCgaUGACCaGCUcgcaGaCCUCGUu -3'
miRNA:   3'- agCGCCGCCG--GCUGG-CGA----C-GGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 77202 0.66 0.648604
Target:  5'- gCGCGGCGGCgccccgcacggcgaUGGCCacGCUGa-UCGUGg -3'
miRNA:   3'- aGCGCCGCCG--------------GCUGG--CGACggAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 63862 0.67 0.642008
Target:  5'- aUCGCGGUGcagacGUCGgcGCCGCUGCCgcCGg- -3'
miRNA:   3'- -AGCGCCGC-----CGGC--UGGCGACGGa-GCac -5'
16054 3' -63.8 NC_004065.1 + 152829 0.67 0.642008
Target:  5'- gUGCGGgGcGCCG-CCGC-GCaCUUGUGg -3'
miRNA:   3'- aGCGCCgC-CGGCuGGCGaCG-GAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 6746 0.67 0.642008
Target:  5'- cCGCGGCGGCacucgGGUCGgU-CCUCGUGg -3'
miRNA:   3'- aGCGCCGCCGg----CUGGCgAcGGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 209151 0.67 0.642008
Target:  5'- gCGCcGCGGCCGugUcGCUcGCCUCu-- -3'
miRNA:   3'- aGCGcCGCCGGCugG-CGA-CGGAGcac -5'
16054 3' -63.8 NC_004065.1 + 78281 0.67 0.641065
Target:  5'- gUGCGGUGGUCGuaGCgGCUcucgaggGCCUCGg- -3'
miRNA:   3'- aGCGCCGCCGGC--UGgCGA-------CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 56144 0.67 0.63918
Target:  5'- -gGCGGCGGCCcacacacacggcguGACgGC-GCCUCa-- -3'
miRNA:   3'- agCGCCGCCGG--------------CUGgCGaCGGAGcac -5'
16054 3' -63.8 NC_004065.1 + 132072 0.67 0.632579
Target:  5'- gUCGCGGUaGGUCcccACCGCUGCCaCGc- -3'
miRNA:   3'- -AGCGCCG-CCGGc--UGGCGACGGaGCac -5'
16054 3' -63.8 NC_004065.1 + 157022 0.67 0.632579
Target:  5'- cUCGUGGCGGCauCG-UCGCccucGuCCUCGUGg -3'
miRNA:   3'- -AGCGCCGCCG--GCuGGCGa---C-GGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 24844 0.67 0.632579
Target:  5'- aCGCGGCgcccgauguuGGCggCGACgGCgGCCUCGa- -3'
miRNA:   3'- aGCGCCG----------CCG--GCUGgCGaCGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 170253 0.67 0.62315
Target:  5'- aUCGUGGCcguGGCCG-CCGCcGCCaccaUCGg- -3'
miRNA:   3'- -AGCGCCG---CCGGCuGGCGaCGG----AGCac -5'
16054 3' -63.8 NC_004065.1 + 113771 0.67 0.62315
Target:  5'- gCGCGGCGGCagaCGACCGa---CUCGg- -3'
miRNA:   3'- aGCGCCGCCG---GCUGGCgacgGAGCac -5'
16054 3' -63.8 NC_004065.1 + 141652 0.67 0.62315
Target:  5'- -gGCGGUGGCgGuGCCGCgGCCgCGg- -3'
miRNA:   3'- agCGCCGCCGgC-UGGCGaCGGaGCac -5'
16054 3' -63.8 NC_004065.1 + 167923 0.67 0.62315
Target:  5'- cCGCGaGCGuaacgaccGCCGcuGCCGCUGCCgUCGc- -3'
miRNA:   3'- aGCGC-CGC--------CGGC--UGGCGACGG-AGCac -5'
16054 3' -63.8 NC_004065.1 + 171811 0.67 0.613727
Target:  5'- gCGCGGCgacgugGGCUuuGACCGCaUGCC-CGUc -3'
miRNA:   3'- aGCGCCG------CCGG--CUGGCG-ACGGaGCAc -5'
16054 3' -63.8 NC_004065.1 + 28996 0.67 0.613727
Target:  5'- -gGCGGCGGUgGcgaggcGCCGCgcgcacgcgGCCUCGa- -3'
miRNA:   3'- agCGCCGCCGgC------UGGCGa--------CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 32970 0.67 0.613727
Target:  5'- gUCGCGGCGGagcaUGACgGagGCCUCGc- -3'
miRNA:   3'- -AGCGCCGCCg---GCUGgCgaCGGAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.