miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 3' -63.8 NC_004065.1 + 1809 0.69 0.476688
Target:  5'- aCGCGGCGG-CGAUCGCgguuCC-CGUGg -3'
miRNA:   3'- aGCGCCGCCgGCUGGCGac--GGaGCAC- -5'
16054 3' -63.8 NC_004065.1 + 6746 0.67 0.642008
Target:  5'- cCGCGGCGGCacucgGGUCGgU-CCUCGUGg -3'
miRNA:   3'- aGCGCCGCCGg----CUGGCgAcGGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 6910 0.73 0.301715
Target:  5'- aCGCGGCGGCUucaGCUGCgggcacgGCCUCGg- -3'
miRNA:   3'- aGCGCCGCCGGc--UGGCGa------CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 17958 0.66 0.679592
Target:  5'- gUCGcCGGaCGGUCGuCCGuCUGCCgcgCGa- -3'
miRNA:   3'- -AGC-GCC-GCCGGCuGGC-GACGGa--GCac -5'
16054 3' -63.8 NC_004065.1 + 18072 0.77 0.160714
Target:  5'- aCGaUGGCGGCagCGACCGCcgcaGCCUCGUGg -3'
miRNA:   3'- aGC-GCCGCCG--GCUGGCGa---CGGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 20300 0.68 0.572481
Target:  5'- gUGUGGUGGacuuuggugaagaCGACCGCaGCCUCuGUGu -3'
miRNA:   3'- aGCGCCGCCg------------GCUGGCGaCGGAG-CAC- -5'
16054 3' -63.8 NC_004065.1 + 20891 0.65 0.706533
Target:  5'- cCGCGGC-GCUGGggaauCCGCUcgcuuucGCCUCGUu -3'
miRNA:   3'- aGCGCCGcCGGCU-----GGCGA-------CGGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 22073 0.68 0.576208
Target:  5'- gUCGCGGCGGCCcaacCCGC-GCgCUCc-- -3'
miRNA:   3'- -AGCGCCGCCGGcu--GGCGaCG-GAGcac -5'
16054 3' -63.8 NC_004065.1 + 22920 0.71 0.378803
Target:  5'- -gGCGGCGGUCGGCgGUUccGUCUCGUc -3'
miRNA:   3'- agCGCCGCCGGCUGgCGA--CGGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 24844 0.67 0.632579
Target:  5'- aCGCGGCgcccgauguuGGCggCGACgGCgGCCUCGa- -3'
miRNA:   3'- aGCGCCG----------CCG--GCUGgCGaCGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 26968 0.76 0.184809
Target:  5'- -gGCGGUGGUgGugCGCUGCCUCa-- -3'
miRNA:   3'- agCGCCGCCGgCugGCGACGGAGcac -5'
16054 3' -63.8 NC_004065.1 + 27837 0.7 0.442599
Target:  5'- -gGUGGUGGCUGGCCGUggUGCCgCGg- -3'
miRNA:   3'- agCGCCGCCGGCUGGCG--ACGGaGCac -5'
16054 3' -63.8 NC_004065.1 + 28996 0.67 0.613727
Target:  5'- -gGCGGCGGUgGcgaggcGCCGCgcgcacgcgGCCUCGa- -3'
miRNA:   3'- agCGCCGCCGgC------UGGCGa--------CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 30519 0.66 0.65143
Target:  5'- aCGUGGCGGCCG-CCGCguggGaagagaCguaCGUGa -3'
miRNA:   3'- aGCGCCGCCGGCuGGCGa---Cg-----Ga--GCAC- -5'
16054 3' -63.8 NC_004065.1 + 31753 0.66 0.698212
Target:  5'- aCGCGGUGuCgGACgCGUUGCacugCUCGUGg -3'
miRNA:   3'- aGCGCCGCcGgCUG-GCGACG----GAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 31895 0.66 0.65143
Target:  5'- -gGCGGCGGCgaUGACCaGCUcgcaGaCCUCGUu -3'
miRNA:   3'- agCGCCGCCG--GCUGG-CGA----C-GGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 32970 0.67 0.613727
Target:  5'- gUCGCGGCGGagcaUGACgGagGCCUCGc- -3'
miRNA:   3'- -AGCGCCGCCg---GCUGgCgaCGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 36106 0.77 0.180582
Target:  5'- cCGUGGCGGCaacggGGCCGCUGCCggCGg- -3'
miRNA:   3'- aGCGCCGCCGg----CUGGCGACGGa-GCac -5'
16054 3' -63.8 NC_004065.1 + 53855 0.66 0.670229
Target:  5'- uUCGCGGCGGUCGcGCCGggaugGCCacucCGUu -3'
miRNA:   3'- -AGCGCCGCCGGC-UGGCga---CGGa---GCAc -5'
16054 3' -63.8 NC_004065.1 + 56144 0.67 0.63918
Target:  5'- -gGCGGCGGCCcacacacacggcguGACgGC-GCCUCa-- -3'
miRNA:   3'- agCGCCGCCGG--------------CUGgCGaCGGAGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.