miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 3' -63.8 NC_004065.1 + 117417 0.68 0.530103
Target:  5'- cUCGCGGCGcggaguggcaGCCGAUCGCgagucaaauacUGCgUCGUc -3'
miRNA:   3'- -AGCGCCGC----------CGGCUGGCG-----------ACGgAGCAc -5'
16054 3' -63.8 NC_004065.1 + 1809 0.69 0.476688
Target:  5'- aCGCGGCGG-CGAUCGCgguuCC-CGUGg -3'
miRNA:   3'- aGCGCCGCCgGCUGGCGac--GGaGCAC- -5'
16054 3' -63.8 NC_004065.1 + 199514 0.69 0.484537
Target:  5'- aCGCGGCGGCCGccacgugcgcgcaGCCGggcGCCUCc-- -3'
miRNA:   3'- aGCGCCGCCGGC-------------UGGCga-CGGAGcac -5'
16054 3' -63.8 NC_004065.1 + 154171 0.69 0.485413
Target:  5'- -gGCGGCGGCUG-UUGCUGgCUCGc- -3'
miRNA:   3'- agCGCCGCCGGCuGGCGACgGAGCac -5'
16054 3' -63.8 NC_004065.1 + 164564 0.69 0.494214
Target:  5'- -gGCGGCGgcGCCGACCGCUucGCgCUCc-- -3'
miRNA:   3'- agCGCCGC--CGGCUGGCGA--CG-GAGcac -5'
16054 3' -63.8 NC_004065.1 + 162004 0.69 0.521035
Target:  5'- cUCGUaGCGaCCGACCGCUcGCUUCGa- -3'
miRNA:   3'- -AGCGcCGCcGGCUGGCGA-CGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 165881 0.69 0.521035
Target:  5'- cCGaaGGCgaGGCCGcACgCGCUGCCgUCGUGg -3'
miRNA:   3'- aGCg-CCG--CCGGC-UG-GCGACGG-AGCAC- -5'
16054 3' -63.8 NC_004065.1 + 56723 0.68 0.530103
Target:  5'- -gGCGGCGGCggCGGCagcaGCUGUCUCu-- -3'
miRNA:   3'- agCGCCGCCG--GCUGg---CGACGGAGcac -5'
16054 3' -63.8 NC_004065.1 + 104159 0.68 0.530103
Target:  5'- cCGCGGCGGUguCGGUCGCcGCUUCGg- -3'
miRNA:   3'- aGCGCCGCCG--GCUGGCGaCGGAGCac -5'
16054 3' -63.8 NC_004065.1 + 169603 0.69 0.476688
Target:  5'- uUCGCGGgGGCCGucacgUCGCUuaaCCUCGUc -3'
miRNA:   3'- -AGCGCCgCCGGCu----GGCGAc--GGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 99559 0.7 0.459476
Target:  5'- cCGCGGCGGaCGGCCGUggUGCgUCa-- -3'
miRNA:   3'- aGCGCCGCCgGCUGGCG--ACGgAGcac -5'
16054 3' -63.8 NC_004065.1 + 200963 0.71 0.409929
Target:  5'- gCGCGGCGGCUccagGAUCGgUGCgUgGUGa -3'
miRNA:   3'- aGCGCCGCCGG----CUGGCgACGgAgCAC- -5'
16054 3' -63.8 NC_004065.1 + 18072 0.77 0.160714
Target:  5'- aCGaUGGCGGCagCGACCGCcgcaGCCUCGUGg -3'
miRNA:   3'- aGC-GCCGCCG--GCUGGCGa---CGGAGCAC- -5'
16054 3' -63.8 NC_004065.1 + 36106 0.77 0.180582
Target:  5'- cCGUGGCGGCaacggGGCCGCUGCCggCGg- -3'
miRNA:   3'- aGCGCCGCCGg----CUGGCGACGGa-GCac -5'
16054 3' -63.8 NC_004065.1 + 118173 0.74 0.248091
Target:  5'- -gGCGGCGGCCGucACgGCUGCCgcCGUu -3'
miRNA:   3'- agCGCCGCCGGC--UGgCGACGGa-GCAc -5'
16054 3' -63.8 NC_004065.1 + 208942 0.74 0.248091
Target:  5'- gUCGUGGCGGCCGAacuguuCgGCUGCCggaugGUGa -3'
miRNA:   3'- -AGCGCCGCCGGCU------GgCGACGGag---CAC- -5'
16054 3' -63.8 NC_004065.1 + 110185 0.74 0.253637
Target:  5'- cUGCGGCGGCCGcgacgcGCCGCcGCC-CGUc -3'
miRNA:   3'- aGCGCCGCCGGC------UGGCGaCGGaGCAc -5'
16054 3' -63.8 NC_004065.1 + 81184 0.72 0.342187
Target:  5'- aUCGCGGCGGCCGcCuCGUgGCCgagCGa- -3'
miRNA:   3'- -AGCGCCGCCGGCuG-GCGaCGGa--GCac -5'
16054 3' -63.8 NC_004065.1 + 22920 0.71 0.378803
Target:  5'- -gGCGGCGGUCGGCgGUUccGUCUCGUc -3'
miRNA:   3'- agCGCCGCCGGCUGgCGA--CGGAGCAc -5'
16054 3' -63.8 NC_004065.1 + 163433 0.71 0.394167
Target:  5'- cCGCGGUGGCCG-CCGCcgUGCagUCGg- -3'
miRNA:   3'- aGCGCCGCCGGCuGGCG--ACGg-AGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.