Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16054 | 5' | -55.7 | NC_004065.1 | + | 84830 | 0.66 | 0.960046 |
Target: 5'- cUGCACGAUGGCgaaAGCGgGC--GUCAUg -3' miRNA: 3'- -AUGUGCUGCCGa--UCGUgCGgcUAGUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 144902 | 0.66 | 0.960046 |
Target: 5'- cACACGAUGuaguaGCUcAGCACGCagaagaaGAUCAg -3' miRNA: 3'- aUGUGCUGC-----CGA-UCGUGCGg------CUAGUg -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 79328 | 0.66 | 0.960046 |
Target: 5'- --gGCGGCGGUUcguGCGCGCgGAggACg -3' miRNA: 3'- augUGCUGCCGAu--CGUGCGgCUagUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 138820 | 0.66 | 0.959337 |
Target: 5'- ---cCGGCGGCgccgaugccgcGCACGCCGAcggCGCu -3' miRNA: 3'- auguGCUGCCGau---------CGUGCGGCUa--GUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 60343 | 0.66 | 0.956416 |
Target: 5'- gGCGcCGuACGcGUUGGUGCGCaCGGUCAUg -3' miRNA: 3'- aUGU-GC-UGC-CGAUCGUGCG-GCUAGUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 224275 | 0.66 | 0.956416 |
Target: 5'- aGCuGCGGagcaGcGCUAGCGCguuGCCGAUCAg -3' miRNA: 3'- aUG-UGCUg---C-CGAUCGUG---CGGCUAGUg -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 145456 | 0.66 | 0.956416 |
Target: 5'- gAgGCGAUGGCgucgGGgGCuGCCGGUC-Ca -3' miRNA: 3'- aUgUGCUGCCGa---UCgUG-CGGCUAGuG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 103423 | 0.66 | 0.956416 |
Target: 5'- gACGCGAUGG--AGCGCGgCCuGAUCGa -3' miRNA: 3'- aUGUGCUGCCgaUCGUGC-GG-CUAGUg -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 71735 | 0.66 | 0.956416 |
Target: 5'- aAUGCGACGGUgacgcGGCGCuaCCGGUCGg -3' miRNA: 3'- aUGUGCUGCCGa----UCGUGc-GGCUAGUg -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 36359 | 0.66 | 0.956416 |
Target: 5'- -cCACGACaGGCgAGUGCGUCGcuaucGUCGCu -3' miRNA: 3'- auGUGCUG-CCGaUCGUGCGGC-----UAGUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 133352 | 0.66 | 0.956416 |
Target: 5'- cGCACGAUccuccgucgGGCgAGCcCGCCGA-CGCc -3' miRNA: 3'- aUGUGCUG---------CCGaUCGuGCGGCUaGUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 126265 | 0.66 | 0.956416 |
Target: 5'- cUGCGCGACGGUccggaGGCccCGCCGcgCGa -3' miRNA: 3'- -AUGUGCUGCCGa----UCGu-GCGGCuaGUg -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 76548 | 0.66 | 0.956416 |
Target: 5'- cUugGCGAUGGUcaUGGCcauGCGCgaGGUCACc -3' miRNA: 3'- -AugUGCUGCCG--AUCG---UGCGg-CUAGUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 118643 | 0.66 | 0.956416 |
Target: 5'- cGCAUGACcuGGCUGGUgagagcgggaGCGCCGAc--- -3' miRNA: 3'- aUGUGCUG--CCGAUCG----------UGCGGCUagug -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 67851 | 0.66 | 0.954133 |
Target: 5'- gGCACGGCGaagaccugcgccgcaGCcGGCG-GCCGAUCAg -3' miRNA: 3'- aUGUGCUGC---------------CGaUCGUgCGGCUAGUg -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 113438 | 0.66 | 0.954133 |
Target: 5'- --aGCGGCGGCcggggGGCcCGCCGugccccucaauaucaAUCACg -3' miRNA: 3'- augUGCUGCCGa----UCGuGCGGC---------------UAGUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 127574 | 0.66 | 0.952567 |
Target: 5'- aAgACGACGaC-GGCACGCCGuucagGUCGCa -3' miRNA: 3'- aUgUGCUGCcGaUCGUGCGGC-----UAGUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 101425 | 0.66 | 0.952567 |
Target: 5'- --gGgGGCGGCUGGCGCGUgCGGaugCGCc -3' miRNA: 3'- augUgCUGCCGAUCGUGCG-GCUa--GUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 163867 | 0.66 | 0.952567 |
Target: 5'- -cCGCGAaccgcuCGGCcAGCugGCGCCGGUcCGCg -3' miRNA: 3'- auGUGCU------GCCGaUCG--UGCGGCUA-GUG- -5' |
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16054 | 5' | -55.7 | NC_004065.1 | + | 201861 | 0.66 | 0.952567 |
Target: 5'- cAgAUGGCGGUUcaGGUcguaGCCGGUCACg -3' miRNA: 3'- aUgUGCUGCCGA--UCGug--CGGCUAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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