miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 5' -55.7 NC_004065.1 + 71735 0.66 0.956416
Target:  5'- aAUGCGACGGUgacgcGGCGCuaCCGGUCGg -3'
miRNA:   3'- aUGUGCUGCCGa----UCGUGc-GGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 35719 0.66 0.939678
Target:  5'- gACugGuACcGCUGGCgacucgGCGCCaGAUCGCg -3'
miRNA:   3'- aUGugC-UGcCGAUCG------UGCGG-CUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 60343 0.66 0.956416
Target:  5'- gGCGcCGuACGcGUUGGUGCGCaCGGUCAUg -3'
miRNA:   3'- aUGU-GC-UGC-CGAUCGUGCG-GCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 113438 0.66 0.954133
Target:  5'- --aGCGGCGGCcggggGGCcCGCCGugccccucaauaucaAUCACg -3'
miRNA:   3'- augUGCUGCCGa----UCGuGCGGC---------------UAGUG- -5'
16054 5' -55.7 NC_004065.1 + 62087 0.66 0.948497
Target:  5'- gGgGCGACGGCagcGGCAgCGgCGGUCGu -3'
miRNA:   3'- aUgUGCUGCCGa--UCGU-GCgGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 114601 0.66 0.948497
Target:  5'- -cUACGAgGGCUGGUAuCGCCc-UCGCu -3'
miRNA:   3'- auGUGCUgCCGAUCGU-GCGGcuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 125607 0.66 0.939213
Target:  5'- gUGCGCGGCGGgUcgauGCGCGCCuGGUagaagugCACg -3'
miRNA:   3'- -AUGUGCUGCCgAu---CGUGCGG-CUA-------GUG- -5'
16054 5' -55.7 NC_004065.1 + 36359 0.66 0.956416
Target:  5'- -cCACGACaGGCgAGUGCGUCGcuaucGUCGCu -3'
miRNA:   3'- auGUGCUG-CCGaUCGUGCGGC-----UAGUG- -5'
16054 5' -55.7 NC_004065.1 + 182704 0.66 0.939678
Target:  5'- gACuGCGACGGUaccgACGCUGGUCGCg -3'
miRNA:   3'- aUG-UGCUGCCGaucgUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 88722 0.66 0.952567
Target:  5'- gGCGCGAgCGGCggaugAGCACGUCcaccagcuuGGUgGCg -3'
miRNA:   3'- aUGUGCU-GCCGa----UCGUGCGG---------CUAgUG- -5'
16054 5' -55.7 NC_004065.1 + 84830 0.66 0.960046
Target:  5'- cUGCACGAUGGCgaaAGCGgGC--GUCAUg -3'
miRNA:   3'- -AUGUGCUGCCGa--UCGUgCGgcUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 67851 0.66 0.954133
Target:  5'- gGCACGGCGaagaccugcgccgcaGCcGGCG-GCCGAUCAg -3'
miRNA:   3'- aUGUGCUGC---------------CGaUCGUgCGGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 202697 0.66 0.939678
Target:  5'- cGCAUGGCGGUUccGCGCGUCucuUCACc -3'
miRNA:   3'- aUGUGCUGCCGAu-CGUGCGGcu-AGUG- -5'
16054 5' -55.7 NC_004065.1 + 201861 0.66 0.952567
Target:  5'- cAgAUGGCGGUUcaGGUcguaGCCGGUCACg -3'
miRNA:   3'- aUgUGCUGCCGA--UCGug--CGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 124242 0.66 0.95217
Target:  5'- gUGCGCGaagaugggcgacaGCGGgaAGC-CGCCG-UCGCa -3'
miRNA:   3'- -AUGUGC-------------UGCCgaUCGuGCGGCuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 145456 0.66 0.956416
Target:  5'- gAgGCGAUGGCgucgGGgGCuGCCGGUC-Ca -3'
miRNA:   3'- aUgUGCUGCCGa---UCgUG-CGGCUAGuG- -5'
16054 5' -55.7 NC_004065.1 + 224275 0.66 0.956416
Target:  5'- aGCuGCGGagcaGcGCUAGCGCguuGCCGAUCAg -3'
miRNA:   3'- aUG-UGCUg---C-CGAUCGUG---CGGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 111704 0.66 0.944201
Target:  5'- cUAC-CGcCGGCUGGCAgggaaggggcauCGCCG-UCGCc -3'
miRNA:   3'- -AUGuGCuGCCGAUCGU------------GCGGCuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 144902 0.66 0.960046
Target:  5'- cACACGAUGuaguaGCUcAGCACGCagaagaaGAUCAg -3'
miRNA:   3'- aUGUGCUGC-----CGA-UCGUGCGg------CUAGUg -5'
16054 5' -55.7 NC_004065.1 + 71290 0.66 0.939678
Target:  5'- gUGCuccCGAUGGC---CGCGCUGGUCGCa -3'
miRNA:   3'- -AUGu--GCUGCCGaucGUGCGGCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.