miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 5' -55.7 NC_004065.1 + 127574 0.66 0.952567
Target:  5'- aAgACGACGaC-GGCACGCCGuucagGUCGCa -3'
miRNA:   3'- aUgUGCUGCcGaUCGUGCGGC-----UAGUG- -5'
16054 5' -55.7 NC_004065.1 + 163867 0.66 0.952567
Target:  5'- -cCGCGAaccgcuCGGCcAGCugGCGCCGGUcCGCg -3'
miRNA:   3'- auGUGCU------GCCGaUCG--UGCGGCUA-GUG- -5'
16054 5' -55.7 NC_004065.1 + 124242 0.66 0.95217
Target:  5'- gUGCGCGaagaugggcgacaGCGGgaAGC-CGCCG-UCGCa -3'
miRNA:   3'- -AUGUGC-------------UGCCgaUCGuGCGGCuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 62087 0.66 0.948497
Target:  5'- gGgGCGACGGCagcGGCAgCGgCGGUCGu -3'
miRNA:   3'- aUgUGCUGCCGa--UCGU-GCgGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 114601 0.66 0.948497
Target:  5'- -cUACGAgGGCUGGUAuCGCCc-UCGCu -3'
miRNA:   3'- auGUGCUgCCGAUCGU-GCGGcuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 110817 0.66 0.948497
Target:  5'- gUACGCGAaGGCcaacGGCACGCCuccaGAcUCGCu -3'
miRNA:   3'- -AUGUGCUgCCGa---UCGUGCGG----CU-AGUG- -5'
16054 5' -55.7 NC_004065.1 + 103524 0.66 0.945947
Target:  5'- cGCGCGGCGcauggcgacgcggguGC-AGCGCGCCaacAUCGCg -3'
miRNA:   3'- aUGUGCUGC---------------CGaUCGUGCGGc--UAGUG- -5'
16054 5' -55.7 NC_004065.1 + 111704 0.66 0.944201
Target:  5'- cUAC-CGcCGGCUGGCAgggaaggggcauCGCCG-UCGCc -3'
miRNA:   3'- -AUGuGCuGCCGAUCGU------------GCGGCuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 142768 0.66 0.944201
Target:  5'- gACgACGACGGCcugcUGGUggugGCGCCGGggGCg -3'
miRNA:   3'- aUG-UGCUGCCG----AUCG----UGCGGCUagUG- -5'
16054 5' -55.7 NC_004065.1 + 38620 0.66 0.944201
Target:  5'- cGCGCGAccuucauacucaCGGCgagGGUGCGCCGAg--- -3'
miRNA:   3'- aUGUGCU------------GCCGa--UCGUGCGGCUagug -5'
16054 5' -55.7 NC_004065.1 + 80373 0.66 0.944201
Target:  5'- aACGCGcuGCGGCgcgugcagGGCcugccgacgGCGCCGGUgACg -3'
miRNA:   3'- aUGUGC--UGCCGa-------UCG---------UGCGGCUAgUG- -5'
16054 5' -55.7 NC_004065.1 + 100514 0.66 0.944201
Target:  5'- gUAguCGACGcagaGCUGGUcgAUGCUGGUCACg -3'
miRNA:   3'- -AUguGCUGC----CGAUCG--UGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 109294 0.66 0.944201
Target:  5'- aGCAUGACGGUgcGguCGUCGuUUACg -3'
miRNA:   3'- aUGUGCUGCCGauCguGCGGCuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 182704 0.66 0.939678
Target:  5'- gACuGCGACGGUaccgACGCUGGUCGCg -3'
miRNA:   3'- aUG-UGCUGCCGaucgUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 71290 0.66 0.939678
Target:  5'- gUGCuccCGAUGGC---CGCGCUGGUCGCa -3'
miRNA:   3'- -AUGu--GCUGCCGaucGUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 202697 0.66 0.939678
Target:  5'- cGCAUGGCGGUUccGCGCGUCucuUCACc -3'
miRNA:   3'- aUGUGCUGCCGAu-CGUGCGGcu-AGUG- -5'
16054 5' -55.7 NC_004065.1 + 35719 0.66 0.939678
Target:  5'- gACugGuACcGCUGGCgacucgGCGCCaGAUCGCg -3'
miRNA:   3'- aUGugC-UGcCGAUCG------UGCGG-CUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 125607 0.66 0.939213
Target:  5'- gUGCGCGGCGGgUcgauGCGCGCCuGGUagaagugCACg -3'
miRNA:   3'- -AUGUGCUGCCgAu---CGUGCGG-CUA-------GUG- -5'
16054 5' -55.7 NC_004065.1 + 33273 0.67 0.934925
Target:  5'- -cUugGGCaGGCgcAGCACGCCGAUg-- -3'
miRNA:   3'- auGugCUG-CCGa-UCGUGCGGCUAgug -5'
16054 5' -55.7 NC_004065.1 + 98261 0.67 0.934925
Target:  5'- gGgACGGCGGCccugGGCGCGCgccUCGCg -3'
miRNA:   3'- aUgUGCUGCCGa---UCGUGCGgcuAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.