miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 5' -55.7 NC_004065.1 + 1220 0.68 0.874086
Target:  5'- aACGCGACGGagcgcAGgACGCCuaacaucGAUCGCg -3'
miRNA:   3'- aUGUGCUGCCga---UCgUGCGG-------CUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 4374 0.68 0.881816
Target:  5'- aGCGCGACGGCggcGGCGggaGCCGGa--- -3'
miRNA:   3'- aUGUGCUGCCGa--UCGUg--CGGCUagug -5'
16054 5' -55.7 NC_004065.1 + 6908 0.69 0.844685
Target:  5'- cUACGCGGCGGCUucAGC-UGCgGG-CACg -3'
miRNA:   3'- -AUGUGCUGCCGA--UCGuGCGgCUaGUG- -5'
16054 5' -55.7 NC_004065.1 + 14002 0.68 0.901561
Target:  5'- aACACGAcCGGCUugacCACGUgugUGGUCACa -3'
miRNA:   3'- aUGUGCU-GCCGAuc--GUGCG---GCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 20716 0.74 0.56908
Target:  5'- cACACGACGGCaccgacGGCgacgACGgCGAUCACg -3'
miRNA:   3'- aUGUGCUGCCGa-----UCG----UGCgGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 21237 0.67 0.924727
Target:  5'- cUACGcCGAagaGGCgacaucGCAUGUCGGUCGCa -3'
miRNA:   3'- -AUGU-GCUg--CCGau----CGUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 21312 0.67 0.91928
Target:  5'- gUGCACGAccgccuCGGCguGCGCGgCGGUCAa -3'
miRNA:   3'- -AUGUGCU------GCCGauCGUGCgGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 21975 0.67 0.929942
Target:  5'- gGCAgGACGGUgagGGCcgccacggccACGCCGAcggUCAUc -3'
miRNA:   3'- aUGUgCUGCCGa--UCG----------UGCGGCU---AGUG- -5'
16054 5' -55.7 NC_004065.1 + 22074 0.67 0.929942
Target:  5'- -uCGCGGCGGCccaacccGCGCGCUccgaaGAUCAUa -3'
miRNA:   3'- auGUGCUGCCGau-----CGUGCGG-----CUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 23463 0.67 0.929431
Target:  5'- cGCGCG-CGGCUcGCgacgaugacgACGCCGAguccgauUCGCg -3'
miRNA:   3'- aUGUGCuGCCGAuCG----------UGCGGCU-------AGUG- -5'
16054 5' -55.7 NC_004065.1 + 23632 0.68 0.901561
Target:  5'- gACG-GGCGGCUGGCcucGgGCCGA-CGCa -3'
miRNA:   3'- aUGUgCUGCCGAUCG---UgCGGCUaGUG- -5'
16054 5' -55.7 NC_004065.1 + 25592 0.68 0.874799
Target:  5'- ----aGGCGGCUgagcAGCAgGCCGAUCuCg -3'
miRNA:   3'- augugCUGCCGA----UCGUgCGGCUAGuG- -5'
16054 5' -55.7 NC_004065.1 + 28996 0.69 0.860141
Target:  5'- --gGCGGCGG-UGGCgagGCGCCGcgCGCa -3'
miRNA:   3'- augUGCUGCCgAUCG---UGCGGCuaGUG- -5'
16054 5' -55.7 NC_004065.1 + 29703 0.68 0.897772
Target:  5'- gGCGCcccGACgGGCUGGUAccucugccugcguucCGCCGAUCAg -3'
miRNA:   3'- aUGUG---CUG-CCGAUCGU---------------GCGGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 33273 0.67 0.934925
Target:  5'- -cUugGGCaGGCgcAGCACGCCGAUg-- -3'
miRNA:   3'- auGugCUG-CCGa-UCGUGCGGCUAgug -5'
16054 5' -55.7 NC_004065.1 + 35719 0.66 0.939678
Target:  5'- gACugGuACcGCUGGCgacucgGCGCCaGAUCGCg -3'
miRNA:   3'- aUGugC-UGcCGAUCG------UGCGG-CUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 36295 0.68 0.888618
Target:  5'- gAgGCGAUGGCgccuucgACGCUGAUCGCa -3'
miRNA:   3'- aUgUGCUGCCGaucg---UGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 36359 0.66 0.956416
Target:  5'- -cCACGACaGGCgAGUGCGUCGcuaucGUCGCu -3'
miRNA:   3'- auGUGCUG-CCGaUCGUGCGGC-----UAGUG- -5'
16054 5' -55.7 NC_004065.1 + 37156 0.67 0.929431
Target:  5'- aACAuCGGCGGC-AGCAgugucagcaacucCGCCGccGUCACc -3'
miRNA:   3'- aUGU-GCUGCCGaUCGU-------------GCGGC--UAGUG- -5'
16054 5' -55.7 NC_004065.1 + 38439 0.85 0.162048
Target:  5'- cUACgACGACGGUUuucGCGCGCCGAUCACc -3'
miRNA:   3'- -AUG-UGCUGCCGAu--CGUGCGGCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.