miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16054 5' -55.7 NC_004065.1 + 203335 0.7 0.785083
Target:  5'- gUACAacCGACGuCUAGUuguacggucuugACGCCGAUCACc -3'
miRNA:   3'- -AUGU--GCUGCcGAUCG------------UGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 132111 0.72 0.689403
Target:  5'- cGCGCGGCGGUUcgaGGUgaACGCCGGgucCACg -3'
miRNA:   3'- aUGUGCUGCCGA---UCG--UGCGGCUa--GUG- -5'
16054 5' -55.7 NC_004065.1 + 64544 0.72 0.718987
Target:  5'- gGCGCGACGGCgacacacAGCugGaCgCGGUCAUc -3'
miRNA:   3'- aUGUGCUGCCGa------UCGugC-G-GCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 151162 0.71 0.747922
Target:  5'- gGCgACcGCGaGCUGGCGCGCCGGcCGCc -3'
miRNA:   3'- aUG-UGcUGC-CGAUCGUGCGGCUaGUG- -5'
16054 5' -55.7 NC_004065.1 + 196404 0.71 0.747922
Target:  5'- aACGCGAUGGCcuUGGcCAUGCCGGccCGCa -3'
miRNA:   3'- aUGUGCUGCCG--AUC-GUGCGGCUa-GUG- -5'
16054 5' -55.7 NC_004065.1 + 200751 0.71 0.747922
Target:  5'- gACGaGGCGGCUcaCGCGUCGGUCGCu -3'
miRNA:   3'- aUGUgCUGCCGAucGUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 117406 0.71 0.757381
Target:  5'- cGCGCGcugggcucGCGGCgcggagUGGCA-GCCGAUCGCg -3'
miRNA:   3'- aUGUGC--------UGCCG------AUCGUgCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 113305 0.71 0.766734
Target:  5'- cGgGCGACGccGCUcGCGCGCCGGaCGCg -3'
miRNA:   3'- aUgUGCUGC--CGAuCGUGCGGCUaGUG- -5'
16054 5' -55.7 NC_004065.1 + 137644 0.71 0.775971
Target:  5'- aGCACGugGGCUAGCAgGuuGcGUUg- -3'
miRNA:   3'- aUGUGCugCCGAUCGUgCggC-UAGug -5'
16054 5' -55.7 NC_004065.1 + 123757 0.73 0.669437
Target:  5'- aGCACcuCGGUgcgccGCGCGCCGGUCGCc -3'
miRNA:   3'- aUGUGcuGCCGau---CGUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 229281 0.74 0.599041
Target:  5'- -cCGCGAC-GC-GGCACGCUGGUCGCg -3'
miRNA:   3'- auGUGCUGcCGaUCGUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 20716 0.74 0.56908
Target:  5'- cACACGACGGCaccgacGGCgacgACGgCGAUCACg -3'
miRNA:   3'- aUGUGCUGCCGa-----UCG----UGCgGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 149052 0.79 0.338415
Target:  5'- gGCgACGACGGCggcGGCAgGCCGAUCGg -3'
miRNA:   3'- aUG-UGCUGCCGa--UCGUgCGGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 145738 0.77 0.454523
Target:  5'- gGCGgGAgCGGUgaugAGUGCGCCGAUCGCg -3'
miRNA:   3'- aUGUgCU-GCCGa---UCGUGCGGCUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 168938 0.76 0.463623
Target:  5'- gUACGCGACGcagaGC-AGCGCGCCGA-CACg -3'
miRNA:   3'- -AUGUGCUGC----CGaUCGUGCGGCUaGUG- -5'
16054 5' -55.7 NC_004065.1 + 70116 0.76 0.482102
Target:  5'- gGCAgCGGCGGC-GGCgGCGCCGAUCGa -3'
miRNA:   3'- aUGU-GCUGCCGaUCG-UGCGGCUAGUg -5'
16054 5' -55.7 NC_004065.1 + 77200 0.76 0.491475
Target:  5'- gUGCGCGGCGGCgccccGCACGgCGAUgGCc -3'
miRNA:   3'- -AUGUGCUGCCGau---CGUGCgGCUAgUG- -5'
16054 5' -55.7 NC_004065.1 + 194465 0.75 0.510467
Target:  5'- gGCACGGCGGC--GC-CGCCGcUCACg -3'
miRNA:   3'- aUGUGCUGCCGauCGuGCGGCuAGUG- -5'
16054 5' -55.7 NC_004065.1 + 228990 0.75 0.54931
Target:  5'- gACACGaACGGCgagggAGCGCGCggagcgaGAUCGCg -3'
miRNA:   3'- aUGUGC-UGCCGa----UCGUGCGg------CUAGUG- -5'
16054 5' -55.7 NC_004065.1 + 68582 0.75 0.55917
Target:  5'- aACGCGGCGGC-GGCgauccagaGCGCCGAcacgUCGCa -3'
miRNA:   3'- aUGUGCUGCCGaUCG--------UGCGGCU----AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.