miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16058 3' -62 NC_004065.1 + 102038 0.66 0.773229
Target:  5'- --cCUCgGuGACCCGCggcgGCCGGGCGu- -3'
miRNA:   3'- cuaGAGgC-CUGGGCGg---UGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 40261 0.66 0.773229
Target:  5'- gGGUUUCUgGGGCgCC-CCGCCGGGUAcGAa -3'
miRNA:   3'- -CUAGAGG-CCUG-GGcGGUGGCCCGU-CU- -5'
16058 3' -62 NC_004065.1 + 119980 0.66 0.773229
Target:  5'- --cCUCUGGAgCgCGCCGagCGGGUGGAa -3'
miRNA:   3'- cuaGAGGCCUgG-GCGGUg-GCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 67314 0.66 0.771478
Target:  5'- cGGUCUCCGGcguucuucucgcuACCCGCCGgucgaauggcgcuCCGGacgcGCGGu -3'
miRNA:   3'- -CUAGAGGCC-------------UGGGCGGU-------------GGCC----CGUCu -5'
16058 3' -62 NC_004065.1 + 225647 0.66 0.770602
Target:  5'- --aCUCCGGcuCCCGCCGCCGccgucgcgcuccacGcGCAGc -3'
miRNA:   3'- cuaGAGGCCu-GGGCGGUGGC--------------C-CGUCu -5'
16058 3' -62 NC_004065.1 + 125422 0.66 0.764433
Target:  5'- aGUCggCCGGcGCCagCGCC-UCGGGCAGGu -3'
miRNA:   3'- cUAGa-GGCC-UGG--GCGGuGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 213568 0.66 0.763548
Target:  5'- cGGUCUagcgaacgugguaCCGGGCUCGCUAgUGGGCucGGGc -3'
miRNA:   3'- -CUAGA-------------GGCCUGGGCGGUgGCCCG--UCU- -5'
16058 3' -62 NC_004065.1 + 39938 0.66 0.763548
Target:  5'- cGAUcCUCCGGugCCGCgGCucauuguCGGaCAGAa -3'
miRNA:   3'- -CUA-GAGGCCugGGCGgUG-------GCCcGUCU- -5'
16058 3' -62 NC_004065.1 + 18514 0.66 0.759106
Target:  5'- uGGUCgUCGGACUccuggugcacgggauCGUCACCGGGCGc- -3'
miRNA:   3'- -CUAGaGGCCUGG---------------GCGGUGGCCCGUcu -5'
16058 3' -62 NC_004065.1 + 77089 0.66 0.755534
Target:  5'- aGAUCUCCucgucGAUuuGCCGCgGcGGCAGc -3'
miRNA:   3'- -CUAGAGGc----CUGggCGGUGgC-CCGUCu -5'
16058 3' -62 NC_004065.1 + 168590 0.66 0.73746
Target:  5'- ----gUCGGGCCgGCC-CUGGGUAGGg -3'
miRNA:   3'- cuagaGGCCUGGgCGGuGGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 68744 0.66 0.73746
Target:  5'- gGGUCgcugCCGGACUCGgaCAUCGcGGCGGu -3'
miRNA:   3'- -CUAGa---GGCCUGGGCg-GUGGC-CCGUCu -5'
16058 3' -62 NC_004065.1 + 83448 0.66 0.731972
Target:  5'- cGggCUCCGGcacgagcggcaccuuACCCGCgACgccgacgauguCGGGCAGGc -3'
miRNA:   3'- -CuaGAGGCC---------------UGGGCGgUG-----------GCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 109083 0.66 0.728298
Target:  5'- -cUgUCCGGGCCCauGUCGgacauuCUGGGCGGAg -3'
miRNA:   3'- cuAgAGGCCUGGG--CGGU------GGCCCGUCU- -5'
16058 3' -62 NC_004065.1 + 180023 0.67 0.719065
Target:  5'- uGUC-CCGGACUCGUcucgCACCGuGCGGAu -3'
miRNA:   3'- cUAGaGGCCUGGGCG----GUGGCcCGUCU- -5'
16058 3' -62 NC_004065.1 + 81658 0.67 0.719065
Target:  5'- uGUCUCUGGugUCGCUgacgcugacggACCGGGUg-- -3'
miRNA:   3'- cUAGAGGCCugGGCGG-----------UGGCCCGucu -5'
16058 3' -62 NC_004065.1 + 122477 0.67 0.719065
Target:  5'- cGUC-CCGGuagcgcacgACCCGCaGCUGGGCGGu -3'
miRNA:   3'- cUAGaGGCC---------UGGGCGgUGGCCCGUCu -5'
16058 3' -62 NC_004065.1 + 120440 0.67 0.719065
Target:  5'- -cUCgUCCGGGCCCucuuGCUGUCGGGCGGc -3'
miRNA:   3'- cuAG-AGGCCUGGG----CGGUGGCCCGUCu -5'
16058 3' -62 NC_004065.1 + 110694 0.67 0.709766
Target:  5'- uGUCUCUGGAgCUGCC-CaGGGCgAGAg -3'
miRNA:   3'- cUAGAGGCCUgGGCGGuGgCCCG-UCU- -5'
16058 3' -62 NC_004065.1 + 88398 0.67 0.681555
Target:  5'- --cCUCCGucgccGAgCCGCCACCGccGGCAGc -3'
miRNA:   3'- cuaGAGGC-----CUgGGCGGUGGC--CCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.